HsaINT0070394 @ hg19
Intron Retention
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131030699-131036251:-
Coord C1 exon
chr9:131036129-131036251
Coord A exon
chr9:131030804-131036128
Coord C2 exon
chr9:131030699-131030803
Length
5325 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CCTGCTCTGTTCTGTGACAGACA
3' ss Score
8.88
Exon sequences
Seq C1 exon
TTGAGAGAATATCAGCAGAGGAATAGCCCTGGTGTTCCTACAGGAGCGAAAAAGAAGAAGAAAATAAAAAATGGCAGTAACCCTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGAGGAT
Seq A exon
GTGAGTCTTGGATGGCCAGGCTCCTGGGGACAGGGGGCCCAAGGGGCAGTAGAGGGTAATTGTTATGATTGTGGAAGAACTGTTGGGTACTGATTAAGAGTTCTGGGTTTGTATCCTACCTGTCCATCTGCTAGGGATGTGATTTAGGGCAAATTGCTTGAGCTTTTTGGGCCTCTCTTTTCACAACTATAAAGTATTGTTTTACTTACACTTGTGAAGTTTAAATGAGATTTGTTATTGTTGTTTTTATGTTAATCCCTAGTACAGGGCCTGCTGTCCTAAACACCCAGGACACCCAGGAAATGGTAGTTGCTGTTTCATTTTCCTCATCTCCAGTCTCAAAGGGAAGCCAGGCCAATGAGAACAGCTACTTGCCATCAGGCTATCCCTTTAGGAGTCACTGAAAGGGCCCCAGGGTGTGGTGAGGAGAGTCCCAGGTGCTAGGATTAGGGGAAGATCTAACTTTTGAGTTCATCTTTGCCACCAGCTTGCTGCGTGACCACAGAAAAACCACTTCTTCCCCTGGGCCTCAGTTTCCTCCTCTGTGAGGTGACATTGGATATGATCAGTGTCTTTCAAACTTGTTTTTTAGCTGGAGCCCCCTTTGTTCAAGTGAACCCTTACTCAGAAGTCTGGTTTTTAAAATGGAGGTGGAGGTTTGTAGTTCTACTAGATTCATTGCCCACATCCTGGGCCTAAGGAGAAGGGTCCAAACAGGATATTAAGAGCTGCATTGGTCAGGTGACTCCACTCTGTGTGACTGCATCGTTCAGGGGACTTTTCCATCTATTTGTTTCTGCCCCTGGCAAGGCAGCAGGTGGCCATTTGGAAGGATGGCACAGGCCATGGTATTGATCTCCTCCACTCTTCTTATTTCATTTCCCTGAACCCACATCTTCCTCCTTCCCTGACTTTCTTGCCTCTCTCTAAGCCACTTCTACCTTTCTCCCCCTGCCCTTGTTTTTCCCTTTTCGCCTCCTGTAGATTCAGGACATTCTGAAGGTGCTGGTGTCCGACCTTAACCGTTCCAATGGGGTAGCGCTCCCCCCATTGGACAAGTGGAAGGTGAGGCAGTGCCGAGACCCCTCTCTGGCTTGCTCTCTCCAGCTGTGCATGCCCCTGAGGCTTCTCTGGTTTGGGGGATACTTTGCCTCTGGCTTATTTTATGTTGCTGCCATTAACCTTCCGCCTGTTTATGTCCGCTTCTTCACCTGCTTGATTGATTGGGTTTTTATTCTTCCCCCAAATCTTTTATCATCTTGGAGAAGGTGAGACATATCTTAAAGTTTAAAAGTTTAAAGGTAATTTGGGAATAACTTTTAGAGCAGGTGTGTGGGATTTGGGGCTTTTTTTTTTCTTCTTTTTTTTTCAGAGACGGAGTCTCACTGCCCAGGCTGGAGTGCAGTGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGTTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCACCATGTCTGGCTCATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGGTCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCTCCCAGTCTGGGATTCTGGGATTTGGGCTTTTGAATGCCCAGTGTGGGTACTCTCAGACTAGGAGAGATGAAAAAAAAAAAACACAAAAAAACCAACAGACCTTTAGGTTTTACCCTAAAGGCAAAGATCAGTAAACCACCTAGAAGTTAGTGTTTTTTTTTTTTTTTTAAATTAATTCACTTTGGTTTAAGAGTAGGGAACAAAGGGTTAAAAGAAAATGAGTTCACATTATAGTTGGAAGGATTGAAGCTATTTTTTCAGAGGAACTAACTGTAAAAGTTGTGAGGTTAACCAAACAGATGAGTGACCAAGACGTTCTGCCCCTAATCTCTCCAAATGGACATTTAGCCATATTCATTGGGCTCTTGACAACAAAGGCACTTTGATAAATAAACAGTGGATAAAATAGATGAACAAGGTAGGCTGCACACCGAGGGAGGCAGACTCCTCTGAAGGAGGCAAGAGAGAATTTTGGAACATTCCAAATGCTCAGCTCGGGGGGAGGTTGGTTCCAAATGGACTCCAGGCTGGAGAAGGTGGCATTTGAAGCTGGCTTGAAGATTAAAGGTGGGTAACATTAATCCATATGGGGAGTGGGGGAGGCAGGGGGAGCGGTGAGGCCGTGGCCAGAGTGTGAACTCACAGAGCACCTTTCAGGAACACAGGGAGCCTGGTGGGGGGCAGGGCATGGAGGTACACAGGGCTGGGAGACAACCTCCTCTGGCTGTGATTTGGCATTTCTTCCATCTCTAACTCACCTGGGGGACTCCTTCCTGCCAAGCCAGAGGAGCAGGGCACGAATAGAGCCTGATCCTGTTGGAGATGGGTATGGGGAGAGGGACTGAGACAGAGCAGCCTTGGCTGCTGTTAGAGAGTTGTCCAGTCTCATACCTGTTACCCTCCAGTTGATCAGGTCTGTCCAGGTGCTGTGACTCACCTTGCCAGCTCAGAGGAGACGCTGAGTGGTACGGCTGGGGAGCACAGGCTTAGAGGTGACCTGCAGCCAAAAGCATTTGGCTTTTGCTCTGCCAATGGTCCAGTGGATTAGGGGGTCTTCAGCCTGTTTCCTAATGCTCTGAGATTCTGTGCCAGCCCAGGTCCCTCTATTCTGGAAACAAAGGCCTAGATCCCCGTATTTCCTTCTTGCTGTTTTGTTTTTGTTTTTGAGAAAGAGTCTTGCTCTTTCTCCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCCCCTCCCGGGTTCAAGTGATTTTCATGCCTCAGCCTCCCAAGTAGCTGGGATTACAGATGTTGCACCATCACGCCCGGCCATTTTTTTTGTATTTTTAATAGAGATGGGGTCTTGCCATGTTGCTCAGGCTGGTTTCGAACTCCTGGCCTCAAGTGATTCACCTGCCTTGGCCTCCCAAAGTGCTGAGATTACATGTGTGAGCCACCATGCCCAGCCCCTTGCTGTTTTTATACCTTCTCTATATCCGTAACTGTTTCCAATGTAGGTTTTGTTTTTTTTTAATTTCTCATTTTTATTACCATGTAAGTTTTCTACTCCAGGAATGCAGGCCTGTGATCGTAGTATCCTGAGCGGAGCTGATAACATTTCCAGAAGTAGGGAATAATGGAGAGAGAAAAAATATCTTAATGGGATGGGACATTTTGAGGAGAGTAGGCTTTTTTAAAAACTCCATCTTGGCTACAAGACTTAAAATAATGAAATAACTTGGTTGCTCACAAAATAATCATGCTATGTGTGTCAGAAAGTCCTCAGAAAAATGCTTTTTCAGCCAAGTGCAGTAGCTCATGCCTGTAATCCCAGCACTTTGGGAGACTGAGGAGGGTGGATCACCTGAGGTCAGGAGTTCGAGAGCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTAGCGTGCACCTATAATCCCAGCTGCTTGGGAGGCTGAAGCAGGAGAATCTCGAACTCAGGAGGCGGAGGTTGCAGTGAGTGGAGATCTCGCCACTACACTCCAGCCTGGGCGACAGAGTGAGACTCCCATCTCAAAAAAAAAAAAAAAAAAAAATTCCCTTCCTCTGAGCATTCTTGTGTCTAATCCTAGAGATCAGTGGGAACCGAAGATGCCAGGAGGGCCCTAAAGCCTAGCAGGGTCCATTGCTAGGAGTGCCAGCCTTCCCTCAAGGCTAATGCCTGGCCAGCAACTGAACCCTTGCTCTGACCTATTAGATTCAGTTGTAGGCATTGTCAAGGAAACACCAGGTTCCATGGTCACAGTAAACTTGCAAAGATGCAAAGGCAGCTTGGCTCATCTTCAGTTCCACCAGCCTCTGCAGCACTTGCTCTAAGGAGGGAAGCAGATTTGGGTTTTCAGAAGCCAGGGCTGAAGGGTCCAGTGAGCGCGCAGTCCTTTCCCTGGAGAGAGGTGTAGTCACTTCTCCCAGACCCAGCTTCCGTGGCCAGGCCCTGGCTCCCTGGTGTTTTTCTCTTGTCCAGCTTAGCTGGTCAGCCAGCTTTTTCCACTGTCTGCCCATCTGGCTTGTCAGATATTAGAAGATCTCTAGAACCAGAGGCTTGGGCGAAGAGTAAGGTCAGAGCCTGGAGAGAGGCTGGGTGGGGCTCTGATCAAGCAGGTAGGTCCAGTTGGGGGCAAGGGAGAGGCTCCACATGACCCCAAGTTCTGAATCCTAGGATTGTCCTCAGGTACTATTCCCAGGAAAGAGGCCCTACAACTTCCAAGTTGCCAAGAGCCACAGGGAAGATGTCTTACCTCTGTTTTCTTGGGTGGTTTCTTGGCTGGGTAGATGTTTTTGGAGGTAAGAGGTCGGGGTGGGGGTGTTGGCCATGGTTTATCCTCTTTTTACCTCCAGAGAGTTGGAGAGAGTCTTCTAGTTGGGCAGCTTTTTTTTTTTCCCCCTGAAAAGGCCTGAATCAGAAACACAGCCAGTAGGCCAAGTGCAATGGCTCACACCTGTAATCTCAACATTTTGGGAGACCAAGGTGGATCACTTGAGCCCAGGACTTTGAGACCAGCCTGGGCAAGATGGCAAGACCATGTTTCTATAGAAATTAGCTGAGCATGGTAGTGTGCACCTATAATCTCAGCTACTAGGGAGGCTGAGGTGGGAGCATTGCTTGAGCCCAGGAGGTGGAAGCTGCAGTGAACTATGATTGTGCCACTGCAGGGGAGAAGGGAAGGGAGGAAAGGAGGAGACAGGCAGATAGCTACATTGTGCATTGCCCAGACAACTACTTCCTCATCACCATCCTCTGCCCAGTAGGGGCCCAGTGAGGGTCACTCTGCAGCACAGACTGGCCTTCTGGAAGAACAGTGCCTTTCTCCTCCCTGACTTTGGCACACCTTCCTCCTGCCTGCTGTGGCTGCCACAGGTCAGAGCCTGCTGCTGTCTTTTGCTGAGCTCCAGGGAGAGCGAGGTCCTCGTGTTCATGAAGGAGGCCGTGCAGCCCCTGCTTTGAGCTTTGGCCATCTGAAATGCTGCCTAGCAGCCCAAGGCCTGGGCAACCAATCCACACCCCTGAGTGGCTCCTAGCATGTGTGACTGTCACTCTGACTGCAGCAACACCTGTCCTACCTGTTCCACACCCTTGTGTTCATAGTACTGAGGCACCTCTCCCGCATGGCCCCCTAACCCCCTGCTCTGTTCTGTGACAG
Seq C2 exon
ACACCCAAGGACAATGCTGCTACTCTACAACCATCTGATGACACCGTGTTACCTGGCGGTGTCCCTTCCCCTGGTGCCAGTCTCACTAGCATGGCGGCATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-GOLGA2:NM_004486:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF150351=Rootletin=PU(6.8=25.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)