MmuINT0072164 @ mm9
Intron Retention
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32147613-32152241:+
Coord C1 exon
chr2:32147613-32147735
Coord A exon
chr2:32147736-32152145
Coord C2 exon
chr2:32152146-32152241
Length
4410 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TCTGCTCTGTTCTGTGACAGGTG
3' ss Score
11.15
Exon sequences
Seq C1 exon
CTGAGAGAGTATCAGCAGAAGAACAGCCCGGGTGTTCCTGCAGGAGCAAAGAAGAAGAAAAAGATTAAAAATGGCCATAGCCCAGAGAGACCCACTGCCAGTGACTGTCAGTCACCAGAGAAT
Seq A exon
GTGAGTCTTGGCCAACAGAGTCCTGTGGAATGGGGGCAGGTGGGAAGAAGCGGGGAGGGCTGTGGTTCAAGTGGAAATGTCAGGTGCTGGTTAAAAAGTCTGGCTTTGAGGGCTTGTTGCCTAGTTCAATGGTAATGAACTAGGGCTCATCTCACAATGGCCCTGGGTTTTATCTCAGCACAGGAAAAATTAAATCTGAGTCTGAATTCTATCTCTCCATCAGTTGGCAATATGATAACTTTAGGGCAAGTTGGTTAAACTCTCTGAGCCTCTTTTTACATAGCTGTACAATAGCGGTAATATTTTTAATGTGTATCTATAAAGATTAAGTGAAGTTTATTGCGGTTGTTTTTCTATTAATTCCCCTAGTGGAGGGTCTGCTGTGGAGTTAACAGTGAGCTAATAGGTACCGCTTGATTTTCTTGGTTTGGGGTAGAAATCAGACCAGAGGGAACATCATTGCTCTCATACTTCTGAAACGCAGCCATCTGTAAGAGATTTGAGTGTTAAGTCCATCATTGTCGTGAGCTTGCTGGGTTACCTCAGGAAAGTCACACACACACACACACACACACACACACACACACACTTCCTTCATCTGACAGGATGATGGTGGACTAGCTTATTGTCTTACAGACTCTCTTTTTAGCTGTACTGTAGCTGTGTAAAAGTGAAGTCTTATTTGAGAGTCAGGTTTTAAGGTGGCCTTGGGGACTGGGGCCTTTGCAGATTGCTCCCTGTAATCCTGGGTGTGTGGAAAGGGTCTTGTGTATGTTGAGTTGCTGCATTGGTCAGGTGTATTGACTCCATCCCTTGGGGACTCTTGCTTACTCTGAGGGCTGCCTCTGACAAGGCAGCAGGTGGCTGCTTGGAAGGATGGCACAGGCCTGGGTATTGATCTGTGCTCCTGAGTGTTCCATCTCCCTGACTGTTTCTCTTCTTCCTGCCCTGACTTTCTTACTTCCCCACCCCTCCCTGCCCCCCTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCCCTCCTCCCTCCTCCCCCCTTTTTCCCTTCTTGCCTGCTGTAGATTAAGGACATTCTGAAGGTGCTGGTGTCCGACCTTAACCGTTCCAATGGGGTCTCACTCCCCCCATTAGACAAGAGGAAGGTGAGGCAGTACTGAGCGAGACTCCCTCTGGCTTGCTCTCCCAGCCATGCATGCCACAGAGGCCTCCCTGCTTTGGGGACCCTCTGCCACTGGCTCACTTTGTGTTGCCTCAGTTAACCATCAGCTCCTGTGTCTGCTTTGTCAACTGCTTGCTTGATTGGGTTCTTTTCTTTCCCTGTATCATTTCTCATCTTAGAGAAGATGAGACCCACCTTGAAAGTTAAAGCTAACTGGGGAAACAACTTTCAGATCGGATGTTTATGAATGAGACTAGAGTTTATGACTGCCTAGCATGGTACTGTCAGACTGGGACAGATGGAACACAAAAACACCTTTCAGGTCTTGTCCTCTGGGCATCTGTCTCTAAAAAACTAGACCATAGAAATTTGTGGTTCTTTTTTATGAACTCATTTTAGTTTGAAACTTAGGAACATAAGGTTATGAGAAAGTGAATTTATTGTATAGTTTCTGGGATTAAGACTTTTTTTTTCTAAGAAACCCTCAACAGGCAGTGGTGGCACATGCCTCTATTCTCAATACTCTGAAGGCATAGAGACAGGCAGATCTCTGAGTCTAGGAGGAAGTGGCCATGCCTGGTCTACAAAGTGAGTTCAAGGACAACTAGAGCTACACAGAGAAACCCTGTCTTGAATAAAAAAAAAATGAAGAGAAACTAACTGCGAAAAATGTAAACTTAACTAACAAATGAGTGACCAGGAGAAGCTGCCCTCAGTCTCTCTGAAAACTCAGTGGACTGAATTCTTGATAGGAAAGGCACTTTGCTAAACAGTGACAAAACAGATGAGCAAGCCAGGCGCAGTAGTCCATGCCTGTGAGCCCAGCGCTCCAGAGACTGAGGCAAGAGGACGGCAAGCCCAAGCCAGCCTGGGCTGCATCTCGAGAGCCAGTCTCAAGCCAATAGCAGACTAGATGCACAGGACAAGAGTCACGTGACCTCCAGGATGCCTCACATAGGGACAGGAGCGCTGGTTCCCAGTGGACTCGAGGCTGGGGAAGGGACATTTGTAGCTGCTTCGATGGTGAAAGATGAGCTGACAGGCAGGCACAGTTCAGACACGGAGCATCCAAGTGCAACAGGACCTGTGTCGCAGGGCTGAGAGTTGGCCTCCTGGACATAACTTAGTACTTCAGTTTACATGTGCCAGGGGACATGTGCCAAACAAAAGGAGCAGGCTTCTGTCCAACTGAAGGAGTGGTCTGAGCCAAGGCCATGTCCTGTTATTCTGGGGACTCGCAGACTGGCGTTGGCTCTTTTCCGCTAACAGAGCTGATGCTGGGCAGGTGCTGCAGTCTGCTCAGGTGCTGGGCCTCAGTACTCAGCTCAGAAATGGCACATTGTGTGTATGGGAATGGGGGACACATATTTGGTGTTTGTTGTGCTATGGATTCACACAGCCCGGGCTCTGGTTTCCCCTTCAGGAAATACTCACCAGAGCACCCCACCCCCCACCCCCCGTCCAGAAGTGAAGACTTTCCTTGTGTTTTTGAAAACTTTCTAGAATTAGTAACTGATTTTCTACTCCAGGAGTAAAGGAGATTAATATCTCCTGAGAAGAGATAAAACAGGAAGTTATGGAAGATAAAAGTCCTTTCTGATGGGATGGGGCATTTTGAGGAGAGTGAAAACTCTGTAAGAACTCCATGCTTAGCTGTAAGACTTAAACTCGAAAAGTTACATGGTTGCCAAAAAGCATTTGAGTCTCCCAGCAGTGCTTAGTGTCCTATCCTTGCGGTTCCTGCTTTTGGGAAGCTGAGGCAAAAAGGAGGTCTCTAGTCTGAGGTCAGCCTGGGCTCTGTGGCAATTCTGAGGCAAGCATGAATTTTAGAGAGACCCCGTTTCAACACCTAGAGAACCAAAAGGTACTCAGAAAAACATTTTTATTTATTTTTTGCCTTTCTGAACATTGTCAGTCTTAGAGATGAATGTTCCTAGGATGCCACAAGGGACCCAGAGCCTAGAAGGGTCTATTGCTGGGAGTGCCACACCTCCAGAATGTCATAGGCGTGGCCAGCTGCCACTGAGCCCCTGGTCTTACCTGTTAGACTCAACTGTAGATGTTGTCAAGGCAGCACCTATGGGTGATTCAGAACTGACAGTCACATGAGTTGTAGGGGTGTGGTCACAGTAACCCTGAAGAGAGTGAAGCTCACAATGAGTTCTCAGAGGTTCTTTCTCGCTTGCTCAAAGGAGGAAATTTGGTCAGCATCCCAAGAGGCTGAGACTGAAGGCTACATAAAGCAAACGGCCCCTTTCTTTGGAGAAAGGCATGGCCACTTCCTCCCAGACCAGCCTTGCTGGACAGGCCTGGACTCTCTGTCCCTCTCCCTTTGTCTTCCCATCCTCTGCCTATCTGGACTGTTGGACATTAGAAGACCTCTAAGCCAGAGACATAGTCTAAGAGTGAAGCCTGAGCTACTGAGCATAGTGGTGCATGCCTTTAATCCTAGCACCTGGGAGGCAGAGGCAGGCAGATCTCTGTTTCAAGGTCAGCCTGGTCTACAGGGTGAGTTCCAGGACAGCAGGGGTTACATAGTGAGGCCCTGTGTCAGAAAATAAAACAAACAAGTGAGGCCTGAGCCTGAAGAGCAACTGGGCCAGCTGGTCAAGCACATAGTTCCTGCCAGGCCAGTGGGGGACTTCCACAAGCTGCCATCTCCGAAATCCTAGGATTGGTCCCTGCCTACATTTCCTAGAAAGCTCACATGATCTCCTAGATACTTCAAGCCAAAGGGCAGCCATTGTTCTCTGCTTTATCCAGTTGTTTCTGAATTGACAAACACAGCCAGTGCGTGGGTCTGGGAGGAGGGAAGGCAGGAAAGCAAGAGAGGGGAGAATGGTTATGTTGACCATGATGTTGAGTCTGTCCCAGAAGCAAGGCCTATAGTCGGGGCAGTTAGCTCTCTGCCTCCTGGACTTGGCACATGTACCTGCTGTGGCTGCCACAGGTCAGAGCTCCAGAGGGAACTAGGTCCTTGGGTGTTCAGGAAGGAGACCCTGCAGCCCCTGCTTTGAGCTCTGGCCCTTCAGAATGCTACTAGGTGACCTGAGGCCTGGGCAGGCCATGTCTGTACCCCAGTAGCTCCCAGCATGTGCGACTGTCCTGTGCCTGCTGCTGTGCTACCCCGCTTGCCCCGTCCCCTCATGTCCATGGCAATGAGGCACCTCTCTCCTCCGTGGTCTTCTGACCCTCTGCTCTGTTCTGTGACAG
Seq C2 exon
GTGCCCACAGACCATATTGCTCCTGCACCGCCAACCGCTGCTACTGACACTATGTTTCTTGGTGTCACCCCTTCCCCTGATGCTGACCTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-Golga2:NM_001080968:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0125413=TP2=FE(45.5=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: