MmuINT0072164 @ mm10
Intron Retention
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32292093-32296721:+
Coord C1 exon
chr2:32292093-32292215
Coord A exon
chr2:32292216-32296625
Coord C2 exon
chr2:32296626-32296721
Length
4410 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TCTGCTCTGTTCTGTGACAGGTG
3' ss Score
11.15
Exon sequences
Seq C1 exon
CTGAGAGAGTATCAGCAGAAGAACAGCCCGGGTGTTCCTGCAGGAGCAAAGAAGAAGAAAAAGATTAAAAATGGCCATAGCCCAGAGAGACCCACTGCCAGTGACTGTCAGTCACCAGAGAAT
Seq A exon
GTGAGTCTTGGCCAACAGAGTCCTGTGGAATGGGGGCAGGTGGGAAGAAGCGGGGAGGGCTGTGGTTCAAGTGGAAATGTCAGGTGCTGGTTAAAAAGTCTGGCTTTGAGGGCTTGTTGCCTAGTTCAATGGTAATGAACTAGGGCTCATCTCACAATGGCCCTGGGTTTTATCTCAGCACAGGAAAAATTAAATCTGAGTCTGAATTCTATCTCTCCATCAGTTGGCAATATGATAACTTTAGGGCAAGTTGGTTAAACTCTCTGAGCCTCTTTTTACATAGCTGTACAATAGCGGTAATATTTTTAATGTGTATCTATAAAGATTAAGTGAAGTTTATTGCGGTTGTTTTTCTATTAATTCCCCTAGTGGAGGGTCTGCTGTGGAGTTAACAGTGAGCTAATAGGTACCGCTTGATTTTCTTGGTTTGGGGTAGAAATCAGACCAGAGGGAACATCATTGCTCTCATACTTCTGAAACGCAGCCATCTGTAAGAGATTTGAGTGTTAAGTCCATCATTGTCGTGAGCTTGCTGGGTTACCTCAGGAAAGTCACACACACACACACACACACACACACACACACACACTTCCTTCATCTGACAGGATGATGGTGGACTAGCTTATTGTCTTACAGACTCTCTTTTTAGCTGTACTGTAGCTGTGTAAAAGTGAAGTCTTATTTGAGAGTCAGGTTTTAAGGTGGCCTTGGGGACTGGGGCCTTTGCAGATTGCTCCCTGTAATCCTGGGTGTGTGGAAAGGGTCTTGTGTATGTTGAGTTGCTGCATTGGTCAGGTGTATTGACTCCATCCCTTGGGGACTCTTGCTTACTCTGAGGGCTGCCTCTGACAAGGCAGCAGGTGGCTGCTTGGAAGGATGGCACAGGCCTGGGTATTGATCTGTGCTCCTGAGTGTTCCATCTCCCTGACTGTTTCTCTTCTTCCTGCCCTGACTTTCTTACTTCCCCACCCCTCCCTGCCCCCCTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCCCTCCTCCCTCCTCCCCCCTTTTTCCCTTCTTGCCTGCTGTAGATTAAGGACATTCTGAAGGTGCTGGTGTCCGACCTTAACCGTTCCAATGGGGTCTCACTCCCCCCATTAGACAAGAGGAAGGTGAGGCAGTACTGAGCGAGACTCCCTCTGGCTTGCTCTCCCAGCCATGCATGCCACAGAGGCCTCCCTGCTTTGGGGACCCTCTGCCACTGGCTCACTTTGTGTTGCCTCAGTTAACCATCAGCTCCTGTGTCTGCTTTGTCAACTGCTTGCTTGATTGGGTTCTTTTCTTTCCCTGTATCATTTCTCATCTTAGAGAAGATGAGACCCACCTTGAAAGTTAAAGCTAACTGGGGAAACAACTTTCAGATCGGATGTTTATGAATGAGACTAGAGTTTATGACTGCCTAGCATGGTACTGTCAGACTGGGACAGATGGAACACAAAAACACCTTTCAGGTCTTGTCCTCTGGGCATCTGTCTCTAAAAAACTAGACCATAGAAATTTGTGGTTCTTTTTTATGAACTCATTTTAGTTTGAAACTTAGGAACATAAGGTTATGAGAAAGTGAATTTATTGTATAGTTTCTGGGATTAAGACTTTTTTTTTCTAAGAAACCCTCAACAGGCAGTGGTGGCACATGCCTCTATTCTCAATACTCTGAAGGCATAGAGACAGGCAGATCTCTGAGTCTAGGAGGAAGTGGCCATGCCTGGTCTACAAAGTGAGTTCAAGGACAACTAGAGCTACACAGAGAAACCCTGTCTTGAATAAAAAAAAAATGAAGAGAAACTAACTGCGAAAAATGTAAACTTAACTAACAAATGAGTGACCAGGAGAAGCTGCCCTCAGTCTCTCTGAAAACTCAGTGGACTGAATTCTTGATAGGAAAGGCACTTTGCTAAACAGTGACAAAACAGATGAGCAAGCCAGGCGCAGTAGTCCATGCCTGTGAGCCCAGCGCTCCAGAGACTGAGGCAAGAGGACGGCAAGCCCAAGCCAGCCTGGGCTGCATCTCGAGAGCCAGTCTCAAGCCAATAGCAGACTAGATGCACAGGACAAGAGTCACGTGACCTCCAGGATGCCTCACATAGGGACAGGAGCGCTGGTTCCCAGTGGACTCGAGGCTGGGGAAGGGACATTTGTAGCTGCTTCGATGGTGAAAGATGAGCTGACAGGCAGGCACAGTTCAGACACGGAGCATCCAAGTGCAACAGGACCTGTGTCGCAGGGCTGAGAGTTGGCCTCCTGGACATAACTTAGTACTTCAGTTTACATGTGCCAGGGGACATGTGCCAAACAAAAGGAGCAGGCTTCTGTCCAACTGAAGGAGTGGTCTGAGCCAAGGCCATGTCCTGTTATTCTGGGGACTCGCAGACTGGCGTTGGCTCTTTTCCGCTAACAGAGCTGATGCTGGGCAGGTGCTGCAGTCTGCTCAGGTGCTGGGCCTCAGTACTCAGCTCAGAAATGGCACATTGTGTGTATGGGAATGGGGGACACATATTTGGTGTTTGTTGTGCTATGGATTCACACAGCCCGGGCTCTGGTTTCCCCTTCAGGAAATACTCACCAGAGCACCCCACCCCCCACCCCCCGTCCAGAAGTGAAGACTTTCCTTGTGTTTTTGAAAACTTTCTAGAATTAGTAACTGATTTTCTACTCCAGGAGTAAAGGAGATTAATATCTCCTGAGAAGAGATAAAACAGGAAGTTATGGAAGATAAAAGTCCTTTCTGATGGGATGGGGCATTTTGAGGAGAGTGAAAACTCTGTAAGAACTCCATGCTTAGCTGTAAGACTTAAACTCGAAAAGTTACATGGTTGCCAAAAAGCATTTGAGTCTCCCAGCAGTGCTTAGTGTCCTATCCTTGCGGTTCCTGCTTTTGGGAAGCTGAGGCAAAAAGGAGGTCTCTAGTCTGAGGTCAGCCTGGGCTCTGTGGCAATTCTGAGGCAAGCATGAATTTTAGAGAGACCCCGTTTCAACACCTAGAGAACCAAAAGGTACTCAGAAAAACATTTTTATTTATTTTTTGCCTTTCTGAACATTGTCAGTCTTAGAGATGAATGTTCCTAGGATGCCACAAGGGACCCAGAGCCTAGAAGGGTCTATTGCTGGGAGTGCCACACCTCCAGAATGTCATAGGCGTGGCCAGCTGCCACTGAGCCCCTGGTCTTACCTGTTAGACTCAACTGTAGATGTTGTCAAGGCAGCACCTATGGGTGATTCAGAACTGACAGTCACATGAGTTGTAGGGGTGTGGTCACAGTAACCCTGAAGAGAGTGAAGCTCACAATGAGTTCTCAGAGGTTCTTTCTCGCTTGCTCAAAGGAGGAAATTTGGTCAGCATCCCAAGAGGCTGAGACTGAAGGCTACATAAAGCAAACGGCCCCTTTCTTTGGAGAAAGGCATGGCCACTTCCTCCCAGACCAGCCTTGCTGGACAGGCCTGGACTCTCTGTCCCTCTCCCTTTGTCTTCCCATCCTCTGCCTATCTGGACTGTTGGACATTAGAAGACCTCTAAGCCAGAGACATAGTCTAAGAGTGAAGCCTGAGCTACTGAGCATAGTGGTGCATGCCTTTAATCCTAGCACCTGGGAGGCAGAGGCAGGCAGATCTCTGTTTCAAGGTCAGCCTGGTCTACAGGGTGAGTTCCAGGACAGCAGGGGTTACATAGTGAGGCCCTGTGTCAGAAAATAAAACAAACAAGTGAGGCCTGAGCCTGAAGAGCAACTGGGCCAGCTGGTCAAGCACATAGTTCCTGCCAGGCCAGTGGGGGACTTCCACAAGCTGCCATCTCCGAAATCCTAGGATTGGTCCCTGCCTACATTTCCTAGAAAGCTCACATGATCTCCTAGATACTTCAAGCCAAAGGGCAGCCATTGTTCTCTGCTTTATCCAGTTGTTTCTGAATTGACAAACACAGCCAGTGCGTGGGTCTGGGAGGAGGGAAGGCAGGAAAGCAAGAGAGGGGAGAATGGTTATGTTGACCATGATGTTGAGTCTGTCCCAGAAGCAAGGCCTATAGTCGGGGCAGTTAGCTCTCTGCCTCCTGGACTTGGCACATGTACCTGCTGTGGCTGCCACAGGTCAGAGCTCCAGAGGGAACTAGGTCCTTGGGTGTTCAGGAAGGAGACCCTGCAGCCCCTGCTTTGAGCTCTGGCCCTTCAGAATGCTACTAGGTGACCTGAGGCCTGGGCAGGCCATGTCTGTACCCCAGTAGCTCCCAGCATGTGCGACTGTCCTGTGCCTGCTGCTGTGCTACCCCGCTTGCCCCGTCCCCTCATGTCCATGGCAATGAGGCACCTCTCTCCTCCGTGGTCTTCTGACCCTCTGCTCTGTTCTGTGACAG
Seq C2 exon
GTGCCCACAGACCATATTGCTCCTGCACCGCCAACCGCTGCTACTGACACTATGTTTCTTGGTGTCACCCCTTCCCCTGATGCTGACCTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546:ENSMUST00000113377:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types