GgaEX0006703 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:4996738-4999564:+
Coord C1 exon
chr17:4996738-4996860
Coord A exon
chr17:4997194-4997274
Coord C2 exon
chr17:4999430-4999564
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCGCCTCCTTTAGATT
3' ss Score
10.71
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTGAAGGAGTACCAGCAGAAGAACAGCCCTGGAGCCACTGCGGGAGCCAAGAAGAAACGAAAAGCTAAAGAAGGAAGTAGGCCTGAGACTCCCACAAACGATGACCGGCAGTCTCCAGAGAAC
Seq A exon
ATTCAGAACATTCTGAAGGTGCTGGTGTCAGACCTTAACCGCTCCAATGGGGTAGCCATACCCTCATTGGACAAAAGGAAG
Seq C2 exon
GCATACTTTGACAGTGATGTTGCCACTCGTAATGCTGACCAGCTTGCTGCCGATGTCCCCGTGCTATCTAACAGCAACAGCCTGCCTAGCTGTGCTTCTGTCCTGCCTGCTCCTGGGAGCACGCAGCTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.593 C2=0.903
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGCCAAGAAGAAACGAA
R:
GGCAGGCTGTTGCTGTTAGAT
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]