BtaEX0000408 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98889247-98893541:-
Coord C1 exon
chr11:98893419-98893541
Coord A exon
chr11:98892364-98892444
Coord C2 exon
chr11:98889247-98889363
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTTCGCCTCCTGTAGATT
3' ss Score
10.87
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TTAAGGGAGTATCAGCAGAAGAACAGCCCTGGTGTTCCTGCAGGAGCTAAGAAAAAAAGAAAGATCAAGAATGGCAGTAGCCCTGAGACAACCACTTCTGGTGATTGTCCGTCACCTGAGGAT
Seq A exon
ATTCAGGACATTCTGGAGGTGCTGGTGTCCGACCTTAACCGCTCCAATGGGGTAGCGATCCCCCCATTGGACAAGTGGAAG
Seq C2 exon
GCGCCCAAAGACCGCGCCGCTCCTGTTACACCGTCTGCTGATGACACCGTGTCACCTGGCGGTGTCCCTTCCCCCAGTGCTAGTCCCCCCCGTGTCACTAGCATGGCATCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.926 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015044fB82
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTCCTGCAGGAGCTAAG
R:
CTAGCACTGGGGGAAGGGAC
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development