RnoEX0039180 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11321154-11326047:+
Coord C1 exon
chr3:11321154-11321276
Coord A exon
chr3:11322267-11322347
Coord C2 exon
chr3:11325952-11326047
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCTCGCCTGCTGTAGATT
3' ss Score
9.3
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTGAGAGAGTATCAGCAGAAGAACAGCCCGGGTGTCCCTGCAGGAGCAAAGAAGAAGAAAAAGATTAAAAATGGCCATAGTCCAGAGAGAACCTCTGCCAGTGATTGTCAGTCAGCAGAGAAT
Seq A exon
ATTCAGGACATTCTGAAGGTGTTGGTGTCCGACCTTAACCGTTCCAATGGGGTCTCGCTCCCCCCATTAGACAAGAGGAAG
Seq C2 exon
GTGCCCACAGACCACACTGCTCCTGCACCACCAAGTACTGCTGCTGCCACTATGTTTCTTGGTGTCGTCCCTTCCCCCGATGCTGATCTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.593 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAGCAGAAGAACAGCCCG
R:
AAACATAGTGGCAGCAGCAGT
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]