GgaINT1000661 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:4997194-4999564:+
Coord C1 exon
chr17:4997194-4997274
Coord A exon
chr17:4997275-4999471
Coord C2 exon
chr17:4999472-4999564
Length
2197 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCACTCGTAATGCTGACCAGCTT
3' ss Score
1.33
Exon sequences
Seq C1 exon
ATTCAGAACATTCTGAAGGTGCTGGTGTCAGACCTTAACCGCTCCAATGGGGTAGCCATACCCTCATTGGACAAAAGGAAG
Seq A exon
GTGAGGCAGTGCTCCGTGTCCCTCTCAGTGACTCACTGTCCCCTCTGCATGCTCAGCTTCTGTTCACACTGACCTTGATTTTGGATGGAGCCTCGTTCTGGCATGTCTGCTGTGTTTTGTGGCTGTTGTTATTAACACGGGGCTGTTTGTTACCATGCGTTTCCATCGCTTGTAAGTGCTTGTTTCCTCCTGTTTTCTGTCAAATAAGTGAACCACGTCCAATGCACATCCTTCAGACAGCTGAGCTGCAAGGTAGAAAAGAACAAGCAGCAGAGTTTGGGGGTGAGGCAGTAAACCAAGTTAACTGCTGAGAGATGCTGTGCTAGGAAGGAGTAGTGCCTTTTTAATCTGTATTTCTCCTGGTCTGTGGTGGTGTTTTATTTACTTCAGTGCTGTGCTCCTGAAGGGCAGGTTTCTGCTCATGCCTGCCCTGAGCAAGCTGTGTAGTTATTCCAGCAGCCCCATTTTATGACAGGTGATGAAAGCTGCACAGGTGATGTACAGCCTGGCAGGTACCACAGTGTTAAGTATGTTTAGGCAGGAAGTGTGGTATTTCTTGTACAGCATTATAGGCTTGAGTGCCTTCCCTCACTCCTGGAGAAGGAAGGGCAGGAAGAAGTCCACTGAGCAATGGAAATGTATTCAGGTGCCAAACAGACCCTGCGGTGCAGGCTGTGTGTTGTCAGAGCTTAAGTGATAGGAGGACCTCCTGTGAGCTCTTTATTATTTTACGTATATGTATGGTATATATTACCATGTTTGTTTTTATGATTTATTCACTTTATAACTGTTTGTTGTGGAAGCAGAAGGAAGGCATTCCTCTGGTTGTGTTACTGACTTTTGCATCTTGAATAACGTTCCAATCAGAACAAATTAAGGACGTGTTTTTGAGGTGTCCTGGGCTCAAGTCCACGTGGTGTTCTCCATTTATGAGAGCCTGAACAAACAGAGATGAAGTAACCTGCACCTGAAAGAAGCAAGGGAGCTCCTGGCTTTCCTTTAAGCCCCTAAAATACATCGCTCCTTGAGAGCACACGGCTGTCCTCCAGACCAATAATGGATGCAGTTCCATTTGTTCCCCTCTGCAGTTTTCCAGCTCATTACTCTCATTAAATCTGTCTTCACTGCTGCTGTAACCCCGTGGCTGTTTGATTCATGGATGAAGTAAAGCAGGTAAATAGGGAATGCCCAGAGAGTTCTTGTTTCGTGCAGACTGCCAAGAATGAAGCGACTGAAATAAAAGGGGACTCTTTCAGATGGATTAGCAGAGAGCTGCAGTGCATTGGTGGGGTTGGCTGCTGAAGGACTACTGTTTGCTTCGTAGTGTCATTAAATGATGGCTTATCAGAGCTGGAGATGAAATAACACTACTTGCCATGAACCAACAGAAACGCAGCTGGTCTGGGTTTGTATGCTCACTGAGCTGCTGGACAGGATGGATGGAGTTGTCCATCTCACCATGGCTTGGTGCTGCTGTTGTCAGCTGTTACTTATCCTCCCACGAATGCCGGATGAGAGCCTTCATCACTGCCCAGGAATAGCTTTTAGGCCCTTTTCTATTTAGATTCTTGTAGCTGTGGGATTCCTAGCTTTGCCAGGGCTGCGGGCACCTGTTCCCAGCCGGGCCCATTTTGGCCTGTTCCCAGATGTCCTGTTCCTAAATGTCTGGTTCATAGCTTGCTGTTTGAGTTTGACTAACCTGGTTGTCAAGCAGTCATTCGCCTGTTCTTCCCCACCTTAATTTGCACCCAGTGATCAGTGTTTTCCCCAGAGACGTGTGAGGGGCAGTGCTGTACCAGCAGTGATGCCATCTGGCTTTGCCCCTTGCTCACTTTTTGACAAATCCTCTGCAGGAAATCCAGAGCGTGAGCTTAGAGTAGGGTGAGATACTGTCAGCCCTCATTAGAGAAAGGATCGTGATGATAGGGCAGTTCTTCAGACTGGATCTAGCAGGACGTAGGGCTGGGATGACTTTTGGTTGTGGGTTGGTGCAGTCACCTGTTTGCTCTGGGGAGGACATAGATTCACTTCCATGTGTCCCTACATGACTTTGTTCACGTCTGTTTCTCACAGGCCTATTGCAAGGTGATGTGTCCACGTGTGTCTCCTTCGTTTTGCACGTAGGCTGTAATTCCTGTGGTGTGTTTTGTGACAGGCATACTTTGACAGTGATGTTGCCACTCGTAATGCTGACCAG
Seq C2 exon
CTTGCTGCCGATGTCCCCGTGCTATCTAACAGCAACAGCCTGCCTAGCTGTGCTTCTGTCCTGCCTGCTCCTGGGAGCACGCAGCTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881:ENSGALT00000007792:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.903
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]