HsaEX0027952 @ hg19
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131030396-131036251:-
Coord C1 exon
chr9:131036129-131036251
Coord A exon
chr9:131030699-131030803
Coord C2 exon
chr9:131030396-131030439
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCTGTTCTGTGACAGACA
3' ss Score
8.88
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
TTGAGAGAATATCAGCAGAGGAATAGCCCTGGTGTTCCTACAGGAGCGAAAAAGAAGAAGAAAATAAAAAATGGCAGTAACCCTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGAGGAT
Seq A exon
ACACCCAAGGACAATGCTGCTACTCTACAACCATCTGATGACACCGTGTTACCTGGCGGTGTCCCTTCCCCTGGTGCCAGTCTCACTAGCATGGCGGCATCTCAG
Seq C2 exon
AATCATGATGCTGACAATGTCCCTAATCTCATGGATGAAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.995 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF150351=Rootletin=PU(6.8=25.0)
C2:
PF150351=Rootletin=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATATCAGCAGAGGAATAGCCC
R:
TGGTTTCATCCATGAGATTAGGGAC
Band lengths:
162-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)