DreALTD0010649-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000002084 | lamb2
Description
laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
Coordinates
chr23:20331848-20332172:-
Coord C1 exon
chr23:20332072-20332172
Coord A exon
chr23:20332034-20332071
Coord C2 exon
chr23:20331848-20331915
Length
38 bp
Sequences
Splice sites
5' ss Seq
CACGTACGT
5' ss Score
8.98
3' ss Seq
TGGTAATTTTCATATTTTAGAGG
3' ss Score
6.19
Exon sequences
Seq C1 exon
CTGCAACAGGACTCCAGAAAGTCCGTCTGACTGAGATAGCGCTCAAACTGTCTGTATGACTAAAAGAACAGGCTGACCATCGACATTATTACTGTAAACAT
Seq A exon
GTGAGTACGCGCTTCGAGTACAAATATGCACGTACCAC
Seq C2 exon
AGGCGCGCGGCAGTTGAAGATTCATCACCATACAGCCATGCGCGCGCTTCTGTTGCTGTCCATCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002084-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGACTGAGATAGCGCTC
R:
CGCATGGCTGTATGGTGATGA
Band lengths:
120-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]