DreEX0042470 @ danRer10
Exon Skipping
Gene
ENSDARG00000002084 | lamb2
Description
laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
Coordinates
chr23:20305751-20332147:-
Coord C1 exon
chr23:20332072-20332147
Coord A exon
chr23:20331848-20331915
Coord C2 exon
chr23:20305751-20305920
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGGTAATTTTCATATTTTAGAGG
3' ss Score
6.19
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TCTGACTGAGATAGCGCTCAAACTGTCTGTATGACTAAAAGAACAGGCTGACCATCGACATTATTACTGTAAACAT
Seq A exon
AGGCGCGCGGCAGTTGAAGATTCATCACCATACAGCCATGCGCGCGCTTCTGTTGCTGTCCATCTGTG
Seq C2 exon
TCCTGTCAGCGGTCAGTGCACAGGAGCCTGATGCTGCTCACGGCTGCACTCATGGAAGCTGCTATCCTGCAACCGGTGACCTCTTGGTGGGTCGAGAAGCCAACCTGAAAGCATCATCCACCTGTGGCCTGCGGAGGAGAGAACCCTACTGCATTGTCAGCCATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002084-'0-3,'0-0,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005512=Laminin_N=PU(15.3=63.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCTCAAACTGTCTGTATGA
R:
GCTTTCAGGTTGGCTTCTCGA
Band lengths:
176-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]