MmuEX0026079 @ mm10
Exon Skipping
Gene
ENSMUSG00000052911 | Lamb2
Description
laminin, beta 2 [Source:MGI Symbol;Acc:MGI:99916]
Coordinates
chr9:108479876-108480381:+
Coord C1 exon
chr9:108479876-108479974
Coord A exon
chr9:108480058-108480143
Coord C2 exon
chr9:108480278-108480381
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTATTTTACTTTTCTTCAGGAT
3' ss Score
10.04
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
TCGTCAGAGTCTCTCAGATTGTGGAGGAGTGACTGCTAGGTCCGACCCTGGACAGATTGAGGGCCTGGAGGGACACCAGCCCAGTACCCACACGGTCGG
Seq A exon
GATGGAGTGGGCCTCAGGAGAACCAGGGAGGGGCAGGCAGGGACAGCCTTTGCCATGGGAACTTCGCTTGGGCCTACTTCTAAGTG
Seq C2 exon
TGCTGGCTGCCACATTGGCCCAGGCCCCGTCCTTGGATGTACCTGGCTGTTCTCGAGGAAGCTGCTATCCAGCCACCGGTGACCTGTTGGTGGGCCGTGCGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052911-'3-6,'3-5,4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=0.504 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005512=Laminin_N=PU(15.3=62.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGAGTGACTGCTAGGT
R:
CACCAACAGGTCACCGGTG
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types