BtaEX0019918 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022635 | LAMC1
Description
Bos taurus laminin, beta 2 (laminin S) (LAMB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046247]
Coordinates
chr22:51456200-51456730:+
Coord C1 exon
chr22:51456200-51456256
Coord A exon
chr22:51456348-51456436
Coord C2 exon
chr22:51456558-51456730
Length
89 bp
Sequences
Splice sites
3' ss Seq
CCTCTTCCTCTCCTCTTCAGGAT
3' ss Score
12.08
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
GAGGGACCGCTGGACCGACAGAGGACCGAGTGGGGAATCAGCCAAGGACCCACACAG
Seq A exon
GATGGAGTGGGTCGCAGCAGGGGGACGAGGGAGGGACCTGCCGGGACAGCCTGGGCCCTGGCAGCTTCATCTGGGCCTGCTGCTGAGCG
Seq C2 exon
TGCTGGTCACCGCCCTGGCCCAGGCCCCAGCCCCGGATGTGCCAAGCTGTTCTCGGGGAAGCTGCTACCCTGCCACAGGCGACCTGCTGGTGGGCCGCGCTGACAGACTGACCGCCTCGTCCACCTGTGGTTTGCGCGGCCCCCAGCCCTACTGCATCGTCAGTCACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022635-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005512=Laminin_N=PU(15.3=62.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCAGCCAAGGACCCACAC
R:
ACGATGCAGTAGGGCTGGG
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development