RnoEX0049264 @ rn6
Exon Skipping
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117268337-117268912:+
Coord C1 exon
chr8:117268337-117268446
Coord A exon
chr8:117268530-117268615
Coord C2 exon
chr8:117268740-117268912
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTATTTTACTTCTCTTCAGGAT
3' ss Score
9.84
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
TTACTCAAAGTCGTCAGAGTCTCTCAGATTGTGGAGGAGTGACTGCTGGTCGGACCCTGGGACAGACTGAGGGCCTGGAGGGAAACCAGCCCAGTACCCACACGGTCAGG
Seq A exon
GATGGAGTGGGCCTCAGGAAAACCAGGGAGGGGCAGGCAGGGACAGCCTGTGCCATGGGAACTTCGCTTGGGCCTACTTCTAAGTG
Seq C2 exon
TGCTGGCTGCCACATTGGCCCAAGTCCCATCCTTGGATGTACCTGGCTGTTCTCGAGGAAGCTGCTATCCAGCCACCGGTGACCTGTTGGTGGGCCGTGCAGACAGACTGACAGCCTCCTCCACGTGTGGCTTGCATAGCCCTCAACCCTACTGTATTGTCAGTCACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768-'1-1,'1-0,2-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.483 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005512=Laminin_N=PU(15.3=62.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCAGCCCAGTACCCACA
R:
AGTAGGGTTGAGGGCTATGCA
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]