DreALTD0012024-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000007198 | mta1
Description
metastasis associated 1 [Source:ZFIN;Acc:ZDB-GENE-131121-353]
Coordinates
chr17:37649715-37655712:+
Coord C1 exon
chr17:37649715-37649842
Coord A exon
NA
Coord C2 exon
chr17:37655561-37655712
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GTTTTTTTTTTTATATTTAGCCA
3' ss Score
6.7
Exon sequences
Seq C1 exon
CAACAAGCCCAATCCTAACCAGCTGAGTGTGAACAGTGTTAAGCCTGGGCTGGTGAATGGAGCGGGGGCTCTTCCGGGAGCTCCAGGACAGCCGGTCGGATTGGGGCGAGCTTGCGAGAGCTGCTACA
Seq A exon
NA
Seq C2 exon
CCACCAGCTCGTATCAGTGGTACTCGTGGGGTCCTCCCAACATGCAGTGCCGACTCTGTGCCTCCTGCTGGACCTACTGGAAAAAGTACGGAGGTCTGAAGATGCCAACCAGACTAGATGGAGAGCGGCCCGGACCCAACCGCAACAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007198-14-13,15-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.841 A=NA C2=0.275
Domain overlap (PFAM):
C1:
PF0032022=GATA=PU(13.2=11.4)
A:
NA
C2:
PF0032022=GATA=PD(84.2=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTGGTGAATGGAGC
R:
ACCACTGATACGAGCTGGTGG
Band lengths:
105-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]