HsaALTD1039207-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105464032-105464567:+
Coord C1 exon
chr14:105464032-105464078
Coord A exon
chr14:105464079-105464147
Coord C2 exon
chr14:105464463-105464567
Length
69 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GGGGTCCCCCTAACATGCAGTGT
3' ss Score
3.81
Exon sequences
Seq C1 exon
TAACAAGCCAAATCCGAACCAAATCAGCGTCAACAACGTCAAGGCCG
Seq A exon
GTGTGGTGAACGGCACGGGGGCGCCGGGCCAGAGCCCTGGGGCTGGCCGGGCCTGCGAGAGCTGTTACA
Seq C2 exon
TGTCGTCTCTGCGCATCTTGTTGGACATATTGGAAGAAATATGGTGGCTTGAAAATGCCAACCCGGTTAGATGGAGAGAGGCCAGGACCAAACCGCAGTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-34-48,35-48-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.995 A=NA C2=0.393
Domain overlap (PFAM):
C1:
PF0032022=GATA=PU(13.2=12.5)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGCCAAATCCGAACCAA
R:
CATGTTACTGCGGTTTGGTCCT
Band lengths:
151-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains