DreALTD0012237-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:7850600-7931385:+
Coord C1 exon
chr9:7850600-7875249
Coord A exon
chr9:7875250-7875377
Coord C2 exon
chr9:7931125-7931385
Length
128 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
3' ss Seq
CTTCTTTTTCCTCTGTCCAGGTT
3' ss Score
10.2
Exon sequences
Seq C1 exon
AAAAACTTCTCCAATTAATCACAACACCGACATTTGATACAATCATAATCCTGTTTGTGTAACTGAAAAGACTGGGCCAATCAATAAGGTAGGACCAAAATAAGGAGTCTGTTTGTATGTGTGTGTGGTTTTGATGTTCATTATAATGAGACTGGACCCTGGATGAGGTGTGTAGGGGGTCTCGATTAGTGTCTGGATTAAACAATCTCACTTCGAGCGCCTCAGGGGTTTTTACCCCTTAAAGGGACTGGCTTTTGAACAAGAATACACCCTGCGTGCCCCTCTACATTCAAACCCCACGTGCTTACAGAGGATTTGTAGGGGGGAGGTTCTGTTACACCTTACGGAGAGGGAGGGTCGGATACGCTCAAGCATATGCCCACAAGCAAGAAACAAACAGTGGAAACGGTGTCACCGAACGGCCAAAGCAAAACCACGCCGGCCAGCGTTTCCATGGCAACGCCAAACTGATGAATGAATGACATCATGGGGACTGGGAG
Seq A exon
GTGAGAGAGTGTGAAATTGATTTGGTGGAGCAGAGCGGAGGCGTACACAGGCAGGCACGTTTTTCTCCATCTCCCTACCTTTCTCCTCTGTTCACGCTTTTCTCTTGCGCGCCGGACGGGATTTGCTG
Seq C2 exon
GTTGTTTTCAGCTATGTAACGTGTTCAGGCAGAACATGGAGATAGACCAGTGTCTGCTGGAGTCTCTGCCGTTGGGCCAGCGTCAGCGGCTGGTCAGACGCATGCGTTGCGAGCAGCTGCGGGTTTACTATGAGCGCGAACGGACACTTCAGAAACAGAGCTTCCCCAAGTCCCGCTCTACCAACCGCAAGAAACAAAAGATCAGCTTCCCGCTTTCAGACATCATCCAGGACGCCATCATTCGGCATGACGACAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582-1-2,2-2,3-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.092
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=PU(12.0=14.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGTGGAAACGGTGTCACC
R:
TTCGCGCTCATAGTAAACCCG
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]