DreEX6035123 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:7832300-7963508:+
Coord C1 exon
chr9:7832300-7832635
Coord A exon
chr9:7931125-7931385
Coord C2 exon
chr9:7963438-7963508
Length
261 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTTTCCTCTGTCCAGGTT
3' ss Score
10.2
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATTTTTCATTTCTGTCCTTCTCTGCCTTCCAGCACGTTCTCCATTATCAATGAACATGCTCTTCTTTTTTAATACAGACTGTTTCTTATCATATTGGATCGTGTTGTGACTCCACCCTTTATATCTCTCTCTCTTTCTGATTCCGCTTTGCAGTTGGATGATTTGGTTTAAGAGACACTAGTAGCACAGGAGAGCTGTGTGGAGTGGAAGCAGCTCTTCTGTGTTTGAGGGATATTAAGAGAGCGGAGAAGTGCGATCAGTGGAGTGGACTGAGACATTTTGGAGATCTCTGGATTATGTATAAACTGCTAGAGAAGAAGAGATCAGGGCTATGAG
Seq A exon
GTTGTTTTCAGCTATGTAACGTGTTCAGGCAGAACATGGAGATAGACCAGTGTCTGCTGGAGTCTCTGCCGTTGGGCCAGCGTCAGCGGCTGGTCAGACGCATGCGTTGCGAGCAGCTGCGGGTTTACTATGAGCGCGAACGGACACTTCAGAAACAGAGCTTCCCCAAGTCCCGCTCTACCAACCGCAAGAAACAAAAGATCAGCTTCCCGCTTTCAGACATCATCCAGGACGCCATCATTCGGCATGACGACAAAGAAG
Seq C2 exon
TTCTAAGGCTGCTGAAGGAGGGAGCTGACCTGAGCACAGTCATTTCCTCTGGAGGATCTCTGCTCCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582-'0-4,'0-2,6-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.092 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=PU(12.0=14.5)
C2:
PF127962=Ank_2=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGTGTTGTGACTCCACCC
R:
TGGAGCAGAGATCCTCCAGAG
Band lengths:
307-568
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002740; ELM sequence: RCEQIKAY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]