RnoEX0057166 @ rn6
Exon Skipping
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84897815-85177622:-
Coord C1 exon
chr16:85177522-85177622
Coord A exon
chr16:84939066-84939329
Coord C2 exon
chr16:84897815-84897885
Length
264 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTCTTTACTTCAGGTT
3' ss Score
11.02
5' ss Seq
AGGGTATGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ATCTCCTCCTGTCTGTGCTCGGTGGCCGGGCGTCCAGCAGCAGAGGAGAGCCGGACTGTCCGTTGCTGGGTCGTGGGACACCGGGGATCCGTCTTCAGCAG
Seq A exon
GTTGCTACCAGCTATGTAATGTTTTTCGATCTCATGAGATGGAAATTGACCAGTGCTTGCTGGAGTCCCTCCCCCTGGGCCAGCGGCAGCGTCTGGTGAGGCGCATGCGCTGTGAGCAAATCAAAGCCTACTATGAGCGAGAGAAAGTGTTCCAGAAGCAGGAAGGGCTCCTGAAGAGAATTAAGCCTGGGAAAAGCCAGAAGGTCCGCTTCGGCCTGGCTGACATGATTCAGGATGCCATTATCCACCACCACGACAAAGAGG
Seq C2 exon
TGCTTCAACTCTTGAAGGAGGGGGCCGACCCACACACTCTTGTTTCCTCAGGAGGGTCTTTACTTCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=PU(12.9=15.8)
C2:
PF127962=Ank_2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCTCCTGTCTGTGCTCG
R:
CAGGTGAAGTAAAGACCCTCCTG
Band lengths:
172-436
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002740; ELM sequence: RCEQIKAY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]