MmuEX1017967 @ mm10
Exon Skipping
Gene
ENSMUSG00000039057 | Myo16
Description
myosin XVI [Source:MGI Symbol;Acc:MGI:2685951]
Coordinates
chr8:10153911-10315525:+
Coord C1 exon
chr8:10153911-10154246
Coord A exon
chr8:10272534-10272797
Coord C2 exon
chr8:10315455-10315525
Length
264 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTTCCTTATTTCAGGTT
3' ss Score
12.02
5' ss Seq
AGGGTATGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
GCGGGGCGCGGCGGGGAGGCGGGAGGGCGCCAGGACCAGGCGACCGCCCTGTTCTTGCGTGGAGACCCAAAGGAACCAGGAGGACCAGAAGGGACGGAACCCAGCTGTGGACTGTGTAGGGAGAGGGGCGGAGCTCGGACCGAGTGGCAGGGACGCGGCTGCGGCCCGAGGGGCGGGGGCTGCGAGCTGCCAACGGGTGGAGTCGGGGTCCCCATCGCGTCTCAGCGCAGCACATCTCCGCCAGTCTGCTCCGTGACCCGGCGTCCAGGAGCAGAGCAGAACCGCCGGGACCGTCCGTTGTTGGATCCCGGGGCACCGGGGATCGTTCTTCGTCAG
Seq A exon
GTTGCTACCAGCTATGTAATGTTTTTCGATCTCATGAGATGGAAATTGACCAGTGCTTGCTGGAGTCCCTCCCCCTGGGCCAGCGGCAGCGTCTGGTGAAGCGCATGCGCTGTGAGCAAATCAAAGCTTACTATGAGCGAGAGAAAGTGTTCCAGAAGCAGGAAGGGCCCCTGAAGAGAAGCAAGCCTGGGAAGAGGCAGAAGGTTCGCTTCGGCCTGGCTGACATGATTCAGGATGCTGTCATCCACCATCATGACAAAGAGG
Seq C2 exon
TGCTTCAACTCTTGAAGGAGGGGGCAGATCCACACACTCTCGTGTCCTCAGGAGGGTCTTTGCTACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039057-'0-5,'0-2,3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.078 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=PU(12.9=15.8)
C2:
PF127962=Ank_2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCAGGAGGACCAGAAG
R:
GATCTGCCCCCTCCTTCAAGA
Band lengths:
296-560
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002740; ELM sequence: RCEQIKAY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types