GgaEX7001179 @ galGal4
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr1:137442561-137486712:+
Coord C1 exon
chr1:137442561-137443015
Coord A exon
chr1:137462786-137463049
Coord C2 exon
chr1:137486642-137486712
Length
264 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTGTATCTTGCAGGCT
3' ss Score
11.45
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CAAGCTTAGTTTGCTGCCGTTTGAAAGCTATCGAAAAGCCATTAACGGGCAGGACTGCGAGAGCCGCAGTGCAGCAGCACACCTCAGCGCTGGGAGAATGTGGCTGCAAGTGCACGCCAATTAAATCTTGCTATTCCTGGGCATGTGGGATTGGGAGCGGTGTCAGTCAACCGCTCTACAATAGCACGTGCAGCGGTCGTGGTTCAAGGCACACAGAGGTCTGTCGGAACTCCGGCAGCCGGGTGATGAGGATGGCCTGGGAGCCTCTGCGGGATCCTGGAACAGAACCTGTGCTGAATAATGTATTCTGAGGTATACTGGATACCTGAGGAGGGAAGGGCTCTAAATAATGCATTTGCCGGGCACGACAGTTGTAGCAGAAGTGGATGCTGAAACCTGTAGCGAGACTGCAGCCTGAGATGAAAGAATGTCTCATTACCATTTTATCAAATGCT
Seq A exon
GCTGTTTCCAGCTATGTAATGTTTTTCGGTCACATGAGATGGAAATTGACCAGTGCTTGCTTGAGTCCCTCCCTCTCGGCCAGCGGCAGCGGCTGGTGAAGCGGATGCGTTGTGATCAAATAAAAGCATATTATGAACGAGAAAAGGCTTTCCAGAAGCGGGAGGGTTATGTGAAAAAACTGAAACATGGAAAGAATCATCGAGTTCGTTTCAACCTTGCTGATATGATACAGGATGCCATCATACATCATGACGATAAGGAAG
Seq C2 exon
TGCTGCGGCTGTTGAAGGATGGTGCTGACCCTCATATGCTTGTTTCCTCGGGAGGTTCCTTGCTCCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'1-3,'1-0,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(12.9=13.5)
C2:
PF127962=Ank_2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCAAGGCACACAGAGGTC
R:
AGCATATGAGGGTCAGCACCA
Band lengths:
295-559
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002740; ELM sequence: RCEQIKAY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]