HsaEX0041044 @ hg38
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr13:108629223-108712731:+
Coord C1 exon
chr13:108629223-108629872
Coord A exon
chr13:108665886-108666149
Coord C2 exon
chr13:108712661-108712731
Length
264 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTGCATTTCTTCCAGGTT
3' ss Score
11.21
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
ACGAAGAAGATTTAGGATCCTTCTATCCGTGGCTTCTCTCCAGCCCACTCATCAGCTTAGTTTGCTGCCATTTGAAAGCTATTGAAAAGCCATTAACAGGCAGGACCGGGAGAGCCGCACTGCAGCACACCTCCGTGCAGCAGAATGTGGCTGCATGTGAACACCAATTAGAGCTGACTATTCCCGGGATTGTGGTACTCGGGGCTGTGTCAATCAAGGGTGCTACAATAGCACGTGCACCAGTGGTGCCTCAAGACCCACCGGGGAGAGGCTTATCTTAACTCCAGCTGCCGAATGAGAATGAGTTTGAAGCTTTTTGCAGGATCATGGAACAGAGCCTCCATGCAATAGTGCATCCTGAGGTAAACTGTTACCTGAGTAAGGGCTTTAAGTAATGCATTTCCTGGGAACGACAGTTGTGACAGAAGAGAATGCTGGAACCCGTAGCAAGATTCCTGTCTGAGATGGAAAGATGTCTCACTATCATTTTATCAAGTGCT
Seq A exon
GTTGCTTTCAGCTATGTAACGTTTTTCGATCCCATGAGATGGAAATCGACCAGTGCTTGCTAGAGTCCCTTCCCCTTGGCCAACGGCAGCGTCTAGTGAAGCGCATGCGCTGTGAGCAAATCAAAGCCTACTATGAGCGCGAGAAGGCTTTTCAGAAGCAGGAAGGGTTCCTGAAAAGGCTGAAGCATGCGAAGAATCCGAAAGTTCACTTCAACCTCACGGACATGCTACAGGACGCGATTATCCACCACAATGACAAAGAAG
Seq C2 exon
TGCTTCGGCTCCTGAAGGAGGGGGCAGACCCCCACACCCTCGTCTCCTCGGGAGGGTCCCTGCTCCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-'2-5,'2-3,4-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(12.9=15.8)
C2:
PF127962=Ank_2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCAGCTGCCGAATGAGA
R:
CAGATGGAGCAGGGACCCTC
Band lengths:
292-556
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002740; ELM sequence: RCEQIKAY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development