HsaEX0041044 @ hg19
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:29822]
Coordinates
chr13:109148076-109365079:+
Coord C1 exon
chr13:109148076-109148272
Coord A exon
chr13:109318234-109318497
Coord C2 exon
chr13:109365009-109365079
Length
264 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTGCATTTCTTCCAGGTT
3' ss Score
11.21
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
AGAGAGAGCCGCCGCCGAGCGGGTGGCGGAGCAGTCCCCAGCCTCCAGCCGGCCTGGCTGCGCGCAACCGCGCCGGCCCCGGGCACAGGGGCAACTGCCGACCCCTCTCACCCGCCGCGCGGGGCTGGTTTCCGAGCCGAGTCCCGGCCATCGCCGCGTCGCCTGGCGCCCGGCTCCGGCGGACCCTTCTCCGGCAG
Seq A exon
GTTGCTTTCAGCTATGTAACGTTTTTCGATCCCATGAGATGGAAATCGACCAGTGCTTGCTAGAGTCCCTTCCCCTTGGCCAACGGCAGCGTCTAGTGAAGCGCATGCGCTGTGAGCAAATCAAAGCCTACTATGAGCGCGAGAAGGCTTTTCAGAAGCAGGAAGGGTTCCTGAAAAGGCTGAAGCATGCGAAGAATCCGAAAGTTCACTTCAACCTCACGGACATGCTACAGGACGCGATTATCCACCACAATGACAAAGAAG
Seq C2 exon
TGCTTCGGCTCCTGAAGGAGGGGGCAGACCCCCACACCCTCGTCTCCTCGGGAGGGTCCCTGCTCCATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=PU(9.6=15.8)
C2:
PF127962=Ank_2=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGTCCCCAGCCTCC
R:
CAGATGGAGCAGGGACCCTC
Band lengths:
240-504
Functional annotations
There are 1 annotated functions for this event
PMID: 19389623
This event
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: pull down. ELM ID: ELMI002740; ELM sequence: RCEQIKAY; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)