DreALTD0013044-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000077367 | ntng2a
Description
netrin g2a [Source:ZFIN;Acc:ZDB-GENE-081105-186]
Coordinates
chr8:12071014-12074952:+
Coord C1 exon
chr8:12071014-12071144
Coord A exon
chr8:12071145-12071148
Coord C2 exon
chr8:12073351-12074952
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
3' ss Seq
TGTCCTTCTTGTGCCACCAGCAA
3' ss Score
7.54
Exon sequences
Seq C1 exon
AGTGTAACTGTAATCAGCTGGGCTCCATACACGCCCGCTGCAATGACACAGGCTTCTGCCAGTGTCGAGACGGCACCGCGGGCCAGAAGTGTGAGGACTGTCTGCCTGGATATACCTGGAAGCAAGGCTGC
Seq A exon
GTGC
Seq C2 exon
CAAACGTGTGCGACGACGAGTTCCTCTTGTGTCAGAATGGCGGCTCCTGCATTCAGAATCAGAAGTGTGTGTGTCCGCCCAACTTCCGGGGTGTTTTGTGTGAGCAGCCGCGCTGCCAGGGTGAGAAAGGGTGCATCGACGGCGCATCGGCCTGCTACCTCAGCACACTGACGCTGCTGCTCTGCCTTTTAGCCAACAGCCTGCTTAAAGCCAGCGCCTAGAAGCCCATCTTAGTCCTGATATCAATCCTAGTCTACTCTACGCAGGCCAAAGGGCTGAACCCTGCGGACGGAGAGAGAAAGAAAAAGAGAGAGAAAGAGTGGCCTGAACCCCGTACGGAACCAGCCTCAAGGTGCTGACATCTTTTTTGGAAAGGCGGGTGGTTCAGCTGAAGTCAAAAAAGCCTTGGTGAGACGAAAAGCGAATCGCTCGTCTCTTAGCATCACCGATCGCCTGAACTTCATACCAAAAAACAGAATAAAGACATGTTCCGTTTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077367-8-11,9-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF101424=PhoPQ_related=FE(43.0=100),PF0005319=Laminin_EGF=PU(79.2=95.5)
A:
NA
C2:
PF101424=PhoPQ_related=PD(26.0=44.8),PF0005319=Laminin_EGF=PD(18.9=17.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGTGAGGACTGTCTGCCT
R:
TGATTCTGAATGCAGGAGCCG
Band lengths:
106-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]