RnoALTD0020625-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013694 | Ntng2
Description
netrin G2 [Source:RGD Symbol;Acc:1307089]
Coordinates
chr3:7742531-7743759:-
Coord C1 exon
chr3:7743625-7743759
Coord A exon
NA
Coord C2 exon
chr3:7742531-7743008
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CTGTCCCCTCCTGTCCGCAGCCA
3' ss Score
11.23
Exon sequences
Seq C1 exon
AATGTAACTGTAACCAGATCGGCTCTGTGCACGATCGTTGCAACGAGACAGGCTTCTGCGAGTGCAGGGAGGGCGCAGTGGGGCCCAAGTGCGACGACTGCCTTCCTACACACTACTGGCGCCAAGGATGCTACC
Seq A exon
NA
Seq C2 exon
CCAATGTGTGCGACGACGACCAGCTGCTCTGCCAGAACGGCGGCACCTGCCAGCAGAACCAGCGCTGCGCCTGCCCGCCTGGCTACGCCGGCATTCGCTGCGAGCAGCCCCGCTGTGACCTCGCCGACGACGCTGGCCCGGACTGTGACCGCGCGCCAGGCACCGTCCCGCGCCCCGACACCCTGCTCGGATGCCTGCTGCTGCTCGGGCTGGCCGCCCGTCTGACCTGCTGAGCCCGTTTTAGGGGTCCGGGGGTCCCGGGCCCGGCGGCGATACGGGTGCGGCCGAGCTGCTCCCAGGTGCTACTCGCAGAGTCCTCCTGCCCTCCCTGCTCCGCCCGCTCTCACCAGCCCCGCCCGGCACTGCCCTCGCCGGCCACAGGGGGCGCTGTGGAGCCCTGGCTCGGCGGACTGCGACTTTGAGTTTTTTTATGACCTAATGTCTCTATTTTTTTCTCATTTTTCCATTTTCCCATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013694-25-17,26-17-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(91.7=95.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(6.2=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAACGAGACAGGCTTCTG
R:
CTAAAACGGGCTCAGCAGGTC
Band lengths:
342-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]