RnoALTD0020625-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000013694 | Ntng2
Description
netrin G2 [Source:RGD Symbol;Acc:1307089]
Coordinates
chr3:7742531-7743759:-
Coord C1 exon
chr3:7743625-7743759
Coord A exon
chr3:7743270-7743624
Coord C2 exon
chr3:7742531-7743008
Length
355 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
CTGTCCCCTCCTGTCCGCAGCCA
3' ss Score
11.23
Exon sequences
Seq C1 exon
AATGTAACTGTAACCAGATCGGCTCTGTGCACGATCGTTGCAACGAGACAGGCTTCTGCGAGTGCAGGGAGGGCGCAGTGGGGCCCAAGTGCGACGACTGCCTTCCTACACACTACTGGCGCCAAGGATGCTACC
Seq A exon
GTGAGTAGACCAGCCCCTGAAGGCAGAGGCTTTAGACTGGGGGCGTGGTTCAGCATGATGGGAGGGGCCTACGTGGGCCTGCTGCTGCCTGGGGTATGGGCTTTGAACACGTGACTGCCGTGAGAAGGGTCTGATGCAACCATGGGCAGGGGTTCAAAGTGTGTTGGGGGTGGTGAGCTCGAGTGGGCATTGCCCGGTCTCCAGTGACGGAGTCCGTGGCAAGTGCGAGCCAGGAAGGAGGAGAGCTAAGGATTGAAGGGGAGATGACTAAAGTTGGCTGAGAGCTCTGGAGTGTGCGCTCAAGAAATGAAGGCTTGGGGAGATACGAGGAACATAGGTTGTCAGAGCGATCCAG
Seq C2 exon
CCAATGTGTGCGACGACGACCAGCTGCTCTGCCAGAACGGCGGCACCTGCCAGCAGAACCAGCGCTGCGCCTGCCCGCCTGGCTACGCCGGCATTCGCTGCGAGCAGCCCCGCTGTGACCTCGCCGACGACGCTGGCCCGGACTGTGACCGCGCGCCAGGCACCGTCCCGCGCCCCGACACCCTGCTCGGATGCCTGCTGCTGCTCGGGCTGGCCGCCCGTCTGACCTGCTGAGCCCGTTTTAGGGGTCCGGGGGTCCCGGGCCCGGCGGCGATACGGGTGCGGCCGAGCTGCTCCCAGGTGCTACTCGCAGAGTCCTCCTGCCCTCCCTGCTCCGCCCGCTCTCACCAGCCCCGCCCGGCACTGCCCTCGCCGGCCACAGGGGGCGCTGTGGAGCCCTGGCTCGGCGGACTGCGACTTTGAGTTTTTTTATGACCTAATGTCTCTATTTTTTTCTCATTTTTCCATTTTCCCATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013694-25-17,26-17-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(91.7=95.7)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(6.2=3.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAACGAGACAGGCTTCTG
R:
CTAAAACGGGCTCAGCAGGTC
Band lengths:
342-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]