DreALTD0014042-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000060841 | pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
Coordinates
chr18:27018692-27025954:+
Coord C1 exon
chr18:27018692-27018792
Coord A exon
NA
Coord C2 exon
chr18:27024823-27025954
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
CTCTCAATTTTCTCTCATAGGCA
3' ss Score
10.7
Exon sequences
Seq C1 exon
CTCTGATCTTCAGCAGGAACTGACGTTTGCGTCTACGACTACATGAGCAAATTTTCCAGCTGGAGGAAAATGTCCAGCGTCAAAGATCGGAGAGTCTGAAG
Seq A exon
NA
Seq C2 exon
GCACCTGTTGTAAAGTTCCCATCAGAACCCAGTGGTCTCCTCATGTACATCGCAAGGCAGAGCTGACACCATGGCCCACATATCCAGTGGCAATGGGTTTAAGTTTGACAGGCCAGCCTCTCCGGGGGTGGTCCGGCCAAAAGGAATTGTGGGGAAGGAAGAGGCTTTACGCATGGAGGTAGAGGCCTTCGATAAAATTAAGCGCGAGAAAAGGCACACACTCCCAGTCACAGCCTCTTCTGTTAATCCCCTTCCCAATCCAACAGCGCAAACATCCAGCAGCCGGCCAGAGAAAGACCTTATTGTATTCTGCGAATCAGAAACACAGAAGAAGGAGCAAAAAGACAACTTTGAGGACATCGATTTGGAGAACCTGACAAAGGAGGAGCTGGAAAAGCTGCTTCTGGATGACAGTTTTGGTGCAAACAAAATGACAAGACCTTCCTCTTTGCTAGGTTGCAATCTCAGCGCATCATATCCTGGCGGACATGCCTTCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060841-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.579
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGTCAAAGATCGGAGAG
R:
TCCCCACAATTCCTTTTGGCC
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]