DreALTD0015554-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000056075 | rca2.1
Description
regulator of complement activation group 2 gene 1 [Source:ZFIN;Acc:ZDB-GENE-050320-60]
Coordinates
chr23:26177665-26180631:-
Coord C1 exon
chr23:26180545-26180631
Coord A exon
NA
Coord C2 exon
chr23:26177665-26177700
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGATG
5' ss Score
1.32
3' ss Seq
TGTTAATTTTCTTTCCACAGAAG
3' ss Score
9.72
Exon sequences
Seq C1 exon
CCTCACCTACAACTACCACAACTGCCAGAGCACCCACAACTGCCAGAACACCCACATCTCACACAACATCTAAAGTGCTACCTGATG
Seq A exon
NA
Seq C2 exon
AAGAAAAATCATCATCGTCTTCCGCACCTCTAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056075-11-13,12-13-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCACAACTGCCAGAACAC
R:
CTCCTAGAGGTGCGGAAGACG
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]