DreEX6080906 @ danRer10
Exon Skipping
Gene
ENSDARG00000056075 | rca2.1
Description
regulator of complement activation group 2 gene 1 [Source:ZFIN;Acc:ZDB-GENE-050320-60]
Coordinates
chr23:26177665-26184338:-
Coord C1 exon
chr23:26184147-26184338
Coord A exon
chr23:26180539-26180631
Coord C2 exon
chr23:26177665-26177700
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTTGTATGTGTAACTCTTAGCCT
3' ss Score
2.88
5' ss Seq
ATGGTATTA
5' ss Score
2.15
Exon sequences
Seq C1 exon
AGCCTTGTAGAGTGCCTAATTTTGGAGGAAATGTCACTTTAAGAGAGGAGTTCAGCTCCAAAGACCTTTTTCCTCATGGAGACAAAGTAGCATTTAAGTGCAAGAGTGGATATGAGCCAGTTGATTCAACAGTATCTAGGATAGCTACTTGTGAGGAAACCAAATGGACAAAACTGCTCCTGACCTGCAAAG
Seq A exon
CCTCACCTACAACTACCACAACTGCCAGAGCACCCACAACTGCCAGAACACCCACATCTCACACAACATCTAAAGTGCTACCTGATGGTGATG
Seq C2 exon
AAGAAAAATCATCATCGTCTTCCGCACCTCTAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056075-'10-13,'10-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.812 C2=0.154
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=95.4)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCAAAGACCTTTTTCCTCA
R:
CTCCTAGAGGTGCGGAAGACG
Band lengths:
175-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]