DreALTD0016772-3/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22095990-22096845:-
Coord C1 exon
chr16:22096807-22096845
Coord A exon
chr16:22096759-22096806
Coord C2 exon
chr16:22095990-22096154
Length
48 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
3' ss Seq
TTTTATGATCCACTTACTAGGCC
3' ss Score
6.25
Exon sequences
Seq C1 exon
ACATGAGCAGAGTTAAACTACCTGCTTCCTCCCGACACG
Seq A exon
GTAAATCCAACAAGATGGAGGAGCGTAACAGCAGCACAACTGGCAAAA
Seq C2 exon
GCCAAGATGATTCCTCTGAAGAGAGCGATGATGAAAAAGATGACGACTCCAATGAGGACGATAGCGACAGCTCGGATGACACTTTTGTGAAAGACACATATTACACCACCAGTTCGGTGTGGAGGAGCTACACCACTCGCAGACAGGCCAAGGGATTGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021-27-30,28-30,29-30,30-30-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.759
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(25.8=100)
A:
NA
C2:
PF0085623=SET=FE(20.1=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTACCTGCTTCCTCCCGA
R:
CCGAACTGGTGGTGTAATATGTGT
Band lengths:
142-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]