DreINT0133537 @ danRer10
Intron Retention
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22095990-22096998:-
Coord C1 exon
chr16:22096759-22096998
Coord A exon
chr16:22096155-22096758
Coord C2 exon
chr16:22095990-22096154
Length
604 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
3' ss Seq
TTTTATGATCCACTTACTAGGCC
3' ss Score
6.25
Exon sequences
Seq C1 exon
GAAAGATCCTGACAGATGACTTTGCCGATAAAGAAGGTTTGGAAATGGGCGATGAGTATTTTGCCAATCTAGACCACATTGAGAGCGTGGAGAACTTTAAGGAAGGTTACGAGAGCGAAGCCCACTGCTCGGACAGCGAAGGCAGCGGTGTGGACATGAGCAGAGTTAAACTACCTGCTTCCTCCCGACACGGTAAATCCAACAAGATGGAGGAGCGTAACAGCAGCACAACTGGCAAAA
Seq A exon
GTGAGAGACCTACGCACACATCTGATTGATGTACTAATGGTTGTGTAAAAGCGGAAACATCCAACACAATCTCACGGCAATTCGTAACTTTTTCATTTAGTGGCTAATTCGTATGAATTTGTACAATTTTGTAAAATTTGCTCATCACCCAATGACGGTTGGTGTTGGGTGCCATGCCTCCTTTTTAAAATTGTACATTTTTGTATGACTGAACTCGTACGAATTAGCCACTAAACTGACAAAACGTAAAATACTTGTTTCCTCGTGAGATCAGGCTGAAACATCTAATCTTTCCTTGGAGAACACCTTCTGCTTACAAGTCCCACTGTCAAGAAACTTCTTCTTTCAAGTCCTCTTTCACACTAACCACAAACATGATCCAAAATCCTTGTATGTTATGTAGTTTGCATTTAAAGTATGCTAAATGTTTATTTATATTTATGCATGTGGTTTTTATTTTTTAATTGCAGTTAATTTTAAACAAAATATTTTTAGATTTTCTTTCTATCTAGTAACACATTTGTTGTATTGTAATAGATATCTAGCAGGTGAAGCTTATCATTTTATCACATGTATATAATATTTTTTATGATCCACTTACTAG
Seq C2 exon
GCCAAGATGATTCCTCTGAAGAGAGCGATGATGAAAAAGATGACGACTCCAATGAGGACGATAGCGACAGCTCGGATGACACTTTTGTGAAAGACACATATTACACCACCAGTTCGGTGTGGAGGAGCTACACCACTCGCAGACAGGCCAAGGGATTGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021:ENSDART00000165824:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=NA C2=0.759
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(29.3=100)
A:
NA
C2:
PF0085623=SET=FE(20.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCGATGAGTATTTTGCCA
R:
CCTTCAATCCCTTGGCCTGTC
Band lengths:
357-961
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]