DreALTD0017317-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000014623 | si:ch211-212d10.1
Description
si:ch211-212d10.1 [Source:ZFIN;Acc:ZDB-GENE-050208-355]
Coordinates
chr22:18508793-18509602:+
Coord C1 exon
chr22:18508793-18509020
Coord A exon
NA
Coord C2 exon
chr22:18509121-18509602
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TCAAATGATTTCATCCACAGGGA
3' ss Score
8.64
Exon sequences
Seq C1 exon
CTTAAGACGCCGGCAACCTTGAACAAAACTGTGAATATTATCACCTGGCCAGAATGTGAGAATAAGGAAATCTCGAAAGACTGCATGGTCTTGGGTTGGGGCTGGCAGGATTATGTTGACGGGTGTCCATCAAGTGTCCTCAAAGAAGCGAATGTGACTCTGATAGACTTTAAAAAGTGTGGCACTAATTACACCCTTTGCACTAACGGATCAATTGGACCAGCAAAG
Seq A exon
NA
Seq C2 exon
GGAGACTCTGGAGGTCCACTTGTTTGTGGAGATGCTGCACAGGGAATTGTGTCTTTTTACACAGAGTCATCTGGAGTATACCTCACAAGATACACTCGTATTTCTCACTACCATCAATGGATTGATCACATCATGAATAAAACTTATCAGCAGCAACTGAAGACATGGAGGGGGAAGTTGTATGAACTCATTTAGTTGTTTGGTCCAGAGTTAATCATTTATGTTTGGTTTTAGTATTGCGGCATTAAACGTGATGTATATGCAAGTTAAAAATATATGTTTATGTGAAACCATTCAACTGATTCAAAAAGCAATGTTTTTTCCTATTTCTAATAACTACTGAGCATTTGTGCAGCTGCAGGGCACCACTGCCACCTTGTGCTGAAAGTGTATTTTATAATTGCTGAAAAAGGATGTTTAGGAAAAATGTGTAATGCAGATAACAGAATAAAATACTATAAAGAAAAAACCTTACTGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014623-3-3,4-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=61.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGCGAATGTGACTCTGA
R:
TGTGCAGCATCTCCACAAACA
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]