DreINT0137944 @ danRer10
Intron Retention
Gene
ENSDARG00000014623 | si:ch211-212d10.1
Description
si:ch211-212d10.1 [Source:ZFIN;Acc:ZDB-GENE-050208-355]
Coordinates
chr22:18508793-18509284:+
Coord C1 exon
chr22:18508793-18509047
Coord A exon
chr22:18509048-18509120
Coord C2 exon
chr22:18509121-18509284
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TCAAATGATTTCATCCACAGGGA
3' ss Score
8.64
Exon sequences
Seq C1 exon
CTTAAGACGCCGGCAACCTTGAACAAAACTGTGAATATTATCACCTGGCCAGAATGTGAGAATAAGGAAATCTCGAAAGACTGCATGGTCTTGGGTTGGGGCTGGCAGGATTATGTTGACGGGTGTCCATCAAGTGTCCTCAAAGAAGCGAATGTGACTCTGATAGACTTTAAAAAGTGTGGCACTAATTACACCCTTTGCACTAACGGATCAATTGGACCAGCAAAGGTATTTTAGATGATTGGACCAGCAAAG
Seq A exon
GTATTTTAGATGATACCAATAATTCATATTTATGCTTATGTAATTAATAATAATCAAATGATTTCATCCACAG
Seq C2 exon
GGAGACTCTGGAGGTCCACTTGTTTGTGGAGATGCTGCACAGGGAATTGTGTCTTTTTACACAGAGTCATCTGGAGTATACCTCACAAGATACACTCGTATTTCTCACTACCATCAATGGATTGATCACATCATGAATAAAACTTATCAGCAGCAACTGAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014623:ENSDART00000105415:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(46.9=95.0)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGTGTCCATCAAGTGTC
R:
CCTGTGCAGCATCTCCACAAA
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]