HsaINT0036844 @ hg19
Intron Retention
Gene
ENSG00000092009 | CMA1
Description
chymase 1, mast cell [Source:HGNC Symbol;Acc:2097]
Coordinates
chr14:24974712-24975488:-
Coord C1 exon
chr14:24975234-24975488
Coord A exon
chr14:24974866-24975233
Coord C2 exon
chr14:24974712-24974865
Length
368 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATC
5' ss Score
4.41
3' ss Seq
TCTCTCTCCTCCCCCTACAGGGA
3' ss Score
12.49
Exon sequences
Seq C1 exon
TTGAAGGAGAAAGCCAGCCTGACCCTGGCTGTGGGGACACTCCCCTTCCCATCCCAATTCAACTTTGTCCCACCTGGGAGAATGTGCCGGGTGGCTGGCTGGGGAAGAACAGGTGTGTTGAAGCCGGGCTCAGACACTCTGCAAGAGGTGAAGCTGAGACTCATGGATCCCCAGGCCTGCAGCCACTTCAGAGACTTTGACCACAATCTTCAGCTGTGTGTGGGCAATCCCAGGAAGACAAAATCTGCATTTAAG
Seq A exon
GTGATCCTCCAACTAGGTTTCCTCTCCAAAACTCACTGTTCAGGGACCAGAATGCTCTTAGAAGGAGATGGGGTCAGAAGGTTGTCAGTCAGTGACAGGGTGAGCATCACAGGAATTGCTGTCCTCCCGTGGTCCAAGACAGCCTCTGACCATCCATTCCAGTCTACTGCACTGGGGGCATGGGGTGATGTGGAGAATGTGGATGACGGTCCCAAGAAAGGAAGAAGGGGCATCAGAACTAGATGTATAAGTGAGGAGCTCCACCTCCTGCGTCTGACTTTAGGTCTCACTGTGACTCCAAGCTGGCTGGCAGACAGGAGTGGAGGACTTCCCGGGCTCACCTTCTTCTCTCTCTCCTCCCCCTACAG
Seq C2 exon
GGAGACTCTGGGGGCCCTCTTCTGTGTGCTGGGGTGGCCCAGGGCATCGTATCCTATGGACGGTCGGATGCAAAGCCCCCTGCTGTCTTCACCCGAATCTCCCATTACCGGCCCTGGATCAACCAGATCCTGCAGGCAAATTAATCCTGGATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092009-CMA1:NM_001836:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(65.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(30.2=81.2)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGAAAGCCAGCCTGAC
R:
GATTCGGGTGAAGACAGCAGG
Band lengths:
352-720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)