Special

HsaINT0036844 @ hg19

Intron Retention

Gene
Description
chymase 1, mast cell [Source:HGNC Symbol;Acc:2097]
Coordinates
chr14:24974712-24975488:-
Coord C1 exon
chr14:24975234-24975488
Coord A exon
chr14:24974866-24975233
Coord C2 exon
chr14:24974712-24974865
Length
368 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATC
5' ss Score
4.41
3' ss Seq
TCTCTCTCCTCCCCCTACAGGGA
3' ss Score
12.49
Exon sequences
Seq C1 exon
TTGAAGGAGAAAGCCAGCCTGACCCTGGCTGTGGGGACACTCCCCTTCCCATCCCAATTCAACTTTGTCCCACCTGGGAGAATGTGCCGGGTGGCTGGCTGGGGAAGAACAGGTGTGTTGAAGCCGGGCTCAGACACTCTGCAAGAGGTGAAGCTGAGACTCATGGATCCCCAGGCCTGCAGCCACTTCAGAGACTTTGACCACAATCTTCAGCTGTGTGTGGGCAATCCCAGGAAGACAAAATCTGCATTTAAG
Seq A exon
GTGATCCTCCAACTAGGTTTCCTCTCCAAAACTCACTGTTCAGGGACCAGAATGCTCTTAGAAGGAGATGGGGTCAGAAGGTTGTCAGTCAGTGACAGGGTGAGCATCACAGGAATTGCTGTCCTCCCGTGGTCCAAGACAGCCTCTGACCATCCATTCCAGTCTACTGCACTGGGGGCATGGGGTGATGTGGAGAATGTGGATGACGGTCCCAAGAAAGGAAGAAGGGGCATCAGAACTAGATGTATAAGTGAGGAGCTCCACCTCCTGCGTCTGACTTTAGGTCTCACTGTGACTCCAAGCTGGCTGGCAGACAGGAGTGGAGGACTTCCCGGGCTCACCTTCTTCTCTCTCTCCTCCCCCTACAG
Seq C2 exon
GGAGACTCTGGGGGCCCTCTTCTGTGTGCTGGGGTGGCCCAGGGCATCGTATCCTATGGACGGTCGGATGCAAAGCCCCCTGCTGTCTTCACCCGAATCTCCCATTACCGGCCCTGGATCAACCAGATCCTGCAGGCAAATTAATCCTGGATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092009-CMA1:NM_001836:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=FE(65.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(30.2=81.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGAAAGCCAGCCTGAC
R:
GATTCGGGTGAAGACAGCAGG
Band lengths:
352-720
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development