DreALTD0019376-1/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000007812 | sp3b
Description
Sp3b transcription factor [Source:ZFIN;Acc:ZDB-GENE-110815-3]
Coordinates
chr6:10492051-10492630:-
Coord C1 exon
chr6:10492450-10492630
Coord A exon
NA
Coord C2 exon
chr6:10492051-10492148
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
CTCTCGCTGTGTCTCCGTAGCCC
3' ss Score
9.97
Exon sequences
Seq C1 exon
GCAAATTTGACTGGTAATCTCCGAAGCCCCACCTTTTGTGTTTCCCGCACCGTCAATCAAAAATAAGAAAAAAAATCGACCCGAATCTCCGATCACAGCCCGCCTTTGATTAAAACAATCATGTTGGGAGTTTAAATGAACAGATAAACCTCCGATTTTATACCTTTTCACGCTATGACTG
Seq A exon
NA
Seq C2 exon
CCCCAGAACAGCCAGCGAAACAGCAGGAAATGGCTGCCTTGGACGTGGACAGCAGTCAGAGCGACTTTCTGCAGCCGGCCAGCGGCGCCCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007812-3-4,4-4,5-4,6-4-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.876
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACAGCCCGCCTTTGATT
R:
CATTTCCTGCTGTTTCGCTGG
Band lengths:
123-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]