DreEX6020713 @ danRer10
Exon Skipping
Gene
ENSDARG00000007812 | sp3b
Description
Sp3b transcription factor [Source:ZFIN;Acc:ZDB-GENE-110815-3]
Coordinates
chr6:10492051-10501605:-
Coord C1 exon
chr6:10501000-10501605
Coord A exon
chr6:10497716-10497833
Coord C2 exon
chr6:10492051-10492148
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATCTATTTCTATACTCTTAGCAC
3' ss Score
4.02
5' ss Seq
AAAGTCTGT
5' ss Score
-1.85
Exon sequences
Seq C1 exon
CTGACCATGGCTCTCCAGGATCACAACTGGCCACACCTGCCATAAAACCAATTTTTGATATCAAAATAAGACTTTTTTCGTATTTTGTTTTATTTGTGATGTCATAGTGTGACAGAAGATCAACGCCTACTTCTGCTTAGCCCCGCCTACCAGGTTGAACTTGTATTAGATTAATAAGACGGCAACACTTGTGAAACAAAAGAATAAAGATGCCTCCGAGGATTACGAGACGTTGTGCTGTGCCAAGCTGCGGAAAAACACAGTCTTTGCACGGCCTTCCTTCAGATCCTAACTTAAGGAAACAGTGGGTGAACTTTATTTTTAATGAAGTTCCAGATCGCATCATTAAATCGCTCTTCGTTTGTTCGCTTCATTTTACTACGGACTCCTTTACGAACAAGACACAGTTTGACGCAGGCTTTTCAGAGAGACTGAAAGTAAAAGACGATGCCGTGCCCACTATATTGGATCCGAAAGTAATGCAACCGCAACGCTCAAGT
Seq A exon
CACAAGACAAGTCGTGAAATGGGATGCCAGACGGAGGAGCTTAACACTCAAGATGGTCAATGCCAAACCTTCCCAGACTTGAAACCGCACACCCTGAAACTAGAACCAAGAAGTGAAA
Seq C2 exon
CCCCAGAACAGCCAGCGAAACAGCAGGAAATGGCTGCCTTGGACGTGGACAGCAGTCAGAGCGACTTTCTGCAGCCGGCCAGCGGCGCCCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007812-'1-4,'1-1,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=1.000 C2=0.876
Domain overlap (PFAM):
C1:
PF054857=THAP=WD(100=88.7)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCCTTCCTTCAGATCCTA
R:
CTGTTTCGCTGGCTGTTCTGG
Band lengths:
253-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]