DreALTD0019380-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000056666 | sp8b
Description
sp8 transcription factor b [Source:ZFIN;Acc:ZDB-GENE-030131-3654]
Coordinates
chr16:19730942-19732953:+
Coord C1 exon
chr16:19730942-19731038
Coord A exon
chr16:19731039-19731140
Coord C2 exon
chr16:19731255-19732953
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGTTGGTGTTGTTGTTTCAGGAG
3' ss Score
8.92
Exon sequences
Seq C1 exon
GGGATTAAAATTTCTTTGGTCAGCCGGGGAGAGAGTCACTTGATTATGTTTTAAGCGAGAGAAAGGAGCAGGAGTTGCATTTCTCAACTACGACATT
Seq A exon
GTATGTATAACACATATTGCTATTTCTATGCTGCGTTTTCGCTTTTGTGTTGCGTGTGCAATTGGCTGTTTCAGTTGACTGTTCTTCGCTACCATTCTTCAG
Seq C2 exon
GAGGAGCCGAGATTGGGGTCGACTCCTTTAGCCATGTTGGCTGCGACGTGTAACAAAATCGGGAGCCCGAGTCCTTCTCCTTCCTCGATTTCGGATAATTCATCTTCGTTCGGAAAAGGATTCCACCCGTGGAAACGAGCGACAGCCAGCAGCTGTAGTTTAGGATCCAGTTTATCCTCTTTCACTCGGAATGGTGGTGGTTTAAGCGACTCTTTTGGCACGAACACTTCTACGGGATCAAGTGCCTTTTCCTTAACTTCTGGTACTTCGTCCAACTCCCACTTCGGAAACGACTACTCCGTTTTCCAGACTTCTGTGTCAAATAACTCCCAAGAGCCAAGCCACCAACCCATGTTTATTTCAAAAGTGCACACATCCGTGGACAGTTTGCAGAGCATTTACCCGAGAATGAGCGTGGCGCATCCCTACGAGTCGTGGTTCAAGTCCTCACACCCTGGCATACCCACGGGGGATGTGGGCACCACGGGCGCGTCCGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056666-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.364
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGAGAGAAAGGAGCAGGA
R:
AAACCACCACCATTCCGAGTG
Band lengths:
248-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]