DreALTD0019724-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10753891-10754305:+
Coord C1 exon
chr4:10753891-10753919
Coord A exon
chr4:10753920-10753952
Coord C2 exon
chr4:10754156-10754305
Length
33 bp
Sequences
Splice sites
5' ss Seq
ACAGTAACT
5' ss Score
1.81
3' ss Seq
TATGTTTTGCTTTTGTACAGTCA
3' ss Score
6.98
Exon sequences
Seq C1 exon
AAGCTGAAAGATCCGTCAGGATTGTTGAC
Seq A exon
GCAAGTGACTGATATCTGCTGAGACTTTAAACA
Seq C2 exon
TCAATAGATCTTGTAAAGCGGACTCCTGAAAACACCAGAATCATGAGGTACCACATAGTGTGCTGCCGGACCCTCCTTCCACAAGACCTCATGCAGCCTCGTAACCTGACCACACTTTCTGGGGACATCCTCTCCATCACATACTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-55-56,56-56,57-56-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.020
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0246917=Fasciclin=FE(40.5=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGAAAGATCCGTCAGG
R:
TGAGGTCTTGTGGAAGGAGGG
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]