DreALTD0019724-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10753891-10754305:+
Coord C1 exon
chr4:10753891-10753919
Coord A exon
chr4:10753920-10754038
Coord C2 exon
chr4:10754156-10754305
Length
119 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGC
5' ss Score
5.06
3' ss Seq
TATGTTTTGCTTTTGTACAGTCA
3' ss Score
6.98
Exon sequences
Seq C1 exon
AAGCTGAAAGATCCGTCAGGATTGTTGAC
Seq A exon
GCAAGTGACTGATATCTGCTGAGACTTTAAACAGTAACTTATATAGGAACAGATATATACTAACTCAAAAAAATTCAATGATTATTTAGTGCAAAAAAAAACATCTTAATTGTGCCATT
Seq C2 exon
TCAATAGATCTTGTAAAGCGGACTCCTGAAAACACCAGAATCATGAGGTACCACATAGTGTGCTGCCGGACCCTCCTTCCACAAGACCTCATGCAGCCTCGTAACCTGACCACACTTTCTGGGGACATCCTCTCCATCACATACTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-55-56,56-56,57-56-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.020
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0246917=Fasciclin=FE(40.5=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGAAAGATCCGTCAGG
R:
TCAGAGTATGTGATGGAGAGGATGT
Band lengths:
178-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]