DreALTD0021057-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000007863 | tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
Coordinates
chr19:20594331-20595119:+
Coord C1 exon
chr19:20594331-20594641
Coord A exon
NA
Coord C2 exon
chr19:20594986-20595119
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGAGTCCGT
5' ss Score
-8.44
3' ss Seq
ATGTATTGCTGTGATGTTAGGAA
3' ss Score
2.13
Exon sequences
Seq C1 exon
GTTATTGGTCGTGAAGGATTTGAAGAGTTAAGGCCAAGAATGTGGAAGAATATTCAAGATAAAAGAAGGCTTTTACAGAGAAAATGTTTACAGAGCAGACGGTTAAGTGGGAAGGGGAAAAAAGAACGGAAGATCGGTCAGATAGAAGCACGCTTGCGTTATGTGTCTAAAGCAGAAAAAAGAAAAGAGGTTTCAGATTGGGGTGAAGAAATGAAAAGGAGAGGAAAAATGAAAACTGAACAAATGAAGACCGAAGAATAAAATGCCTGAAAGAAAGGAATAGCGTATACTGAAAACAGAAGAATGAATGA
Seq A exon
NA
Seq C2 exon
GAATCTCGCTCGGCGTCCAAATCGGATCGGGGGAGTCCTGCCCAACCCAAGATGGAGAGCAGGTCTGGTTCTCCCAGCCCTTCCAGAGCATCCAAGCGTTCTGATTCAAGATCAAGATCACGCTCCAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007863-1-3,3-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086487=DUF1777=PU(21.8=96.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGAAAGAAAGGAATAGCGT
R:
CATCTTGGGTTGGGCAGGAC
Band lengths:
102-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]