DreALTD0021057-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000007863 | tra2a
Description
transformer 2 alpha homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
Coordinates
chr19:20594331-20595119:+
Coord C1 exon
chr19:20594331-20594641
Coord A exon
chr19:20594642-20594654
Coord C2 exon
chr19:20594986-20595119
Length
13 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAAT
5' ss Score
1.48
3' ss Seq
ATGTATTGCTGTGATGTTAGGAA
3' ss Score
2.13
Exon sequences
Seq C1 exon
GTTATTGGTCGTGAAGGATTTGAAGAGTTAAGGCCAAGAATGTGGAAGAATATTCAAGATAAAAGAAGGCTTTTACAGAGAAAATGTTTACAGAGCAGACGGTTAAGTGGGAAGGGGAAAAAAGAACGGAAGATCGGTCAGATAGAAGCACGCTTGCGTTATGTGTCTAAAGCAGAAAAAAGAAAAGAGGTTTCAGATTGGGGTGAAGAAATGAAAAGGAGAGGAAAAATGAAAACTGAACAAATGAAGACCGAAGAATAAAATGCCTGAAAGAAAGGAATAGCGTATACTGAAAACAGAAGAATGAATGA
Seq A exon
GTCCGTAGGCTAA
Seq C2 exon
GAATCTCGCTCGGCGTCCAAATCGGATCGGGGGAGTCCTGCCCAACCCAAGATGGAGAGCAGGTCTGGTTCTCCCAGCCCTTCCAGAGCATCCAAGCGTTCTGATTCAAGATCAAGATCACGCTCCAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007863-1-3,3-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086487=DUF1777=PU(21.8=96.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGAAAGAAAGGAATAGCGT
R:
CATCTTGGGTTGGGCAGGAC
Band lengths:
102-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]