DreALTD0021566-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000100766 | ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:ZFIN;Acc:ZDB-GENE-050522-329]
Coordinates
chr18:50608594-50608926:-
Coord C1 exon
chr18:50608792-50608926
Coord A exon
chr18:50608777-50608791
Coord C2 exon
chr18:50608594-50608678
Length
15 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
3' ss Seq
TGTGTGTTGTGTTGTTCTAGGGA
3' ss Score
10.97
Exon sequences
Seq C1 exon
GACATTGATCTGGAGCACTATGAGATGAAAGAGGAGCCGGTGGAGGGGAAGAAGTCTGAGGATGACGGGATAGAGAAGGAGAATCTGGCCATCCTGGAGAAGATCCGCAAGACCCAGCGGCAGGACCACCTCAAT
Seq A exon
GTAAGTGCGCACTCG
Seq C2 exon
GGAGCTGTGTCTGGATCTGTTCAGGCGTCTGACCGCCTCATGAAGGAGCTGAGAGAGATCTACCGCTCTCAGAGCTATAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100766-11-12,12-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.751 A=NA C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATCTGGCCATCCTGGA
R:
CTCCTTCATGAGGCGGTCAGA
Band lengths:
106-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]