DreALTD0021566-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000100766 | ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:ZFIN;Acc:ZDB-GENE-050522-329]
Coordinates
chr18:50608594-50608926:-
Coord C1 exon
chr18:50608792-50608926
Coord A exon
NA
Coord C2 exon
chr18:50608594-50608678
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TGTGTGTTGTGTTGTTCTAGGGA
3' ss Score
10.97
Exon sequences
Seq C1 exon
GACATTGATCTGGAGCACTATGAGATGAAAGAGGAGCCGGTGGAGGGGAAGAAGTCTGAGGATGACGGGATAGAGAAGGAGAATCTGGCCATCCTGGAGAAGATCCGCAAGACCCAGCGGCAGGACCACCTCAAT
Seq A exon
NA
Seq C2 exon
GGAGCTGTGTCTGGATCTGTTCAGGCGTCTGACCGCCTCATGAAGGAGCTGAGAGAGATCTACCGCTCTCAGAGCTATAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100766-11-12,12-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.751 A=NA C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATCTGGCCATCCTGGA
R:
CTCCTTCATGAGGCGGTCAGA
Band lengths:
106-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]