MmuALTD0015133-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000042572 | Ube2q1
Description
ubiquitin-conjugating enzyme E2Q (putative) 1 [Source:MGI Symbol;Acc:MGI:1917343]
Coordinates
chr3:89583351-89583761:+
Coord C1 exon
chr3:89583351-89583475
Coord A exon
chr3:89583476-89583491
Coord C2 exon
chr3:89583677-89583761
Length
16 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
GTGTTTCCCCTCGTTCCCAGGGT
3' ss Score
10.39
Exon sequences
Seq C1 exon
GATACAGAAGACCTAGATCACTATGAAATGAAAGAGGAAGAGCCAGCCGAGGGCAAGAAGTCTGAAGATGATGGCATCGGAAAAGAGAACCTGGCCATCCTAGAGAAAATTAAAAAGAACCAGAG
Seq A exon
GCAAGATTACTTAAAT
Seq C2 exon
GGTGCAGTGTCTGGCTCGGTGCAGGCCACTGACCGGCTGATGAAGGAGCTCAGGGATATATACCGATCACAGAGTTTCAAAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042572-6-7,7-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAAAGAGAACCTGGCCAT
R:
TCCCTGAGCTCCTTCATCAGC
Band lengths:
104-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: