BtaALTD0023278-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000007515 | UBE2Q1
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 1 (UBE2Q1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206320]
Coordinates
chr3:16085340-16085771:+
Coord C1 exon
chr3:16085340-16085457
Coord A exon
chr3:16085458-16085473
Coord C2 exon
chr3:16085687-16085771
Length
16 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
CCTCCCTGCTTCCTGTGTAGGGT
3' ss Score
10.89
Exon sequences
Seq C1 exon
AAGATCTAGATCACTATGAAATGAAAGAGGAAGAGCCAGCTGAGGGCAAGAAATCTGAAGATGACGGCATCGGAAAAGAAAACTTGGCCATACTAGAGAAAATTAAAAAGAACCAGAG
Seq A exon
GCAAGATTACTTAAAT
Seq C2 exon
GGTGCGGTGTCTGGCTCGGTGCAGGCTACTGACCGGCTGATGAAGGAGCTCAGGGATATATACCGATCACAGAGTTTCAAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007515-21-9,22-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGGCATCGGAAAAGAAAAC
R:
CTTCATCAGCCGGTCAGTAGC
Band lengths:
102-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development