RnoALTD0032630-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189111871-189112274:+
Coord C1 exon
chr2:189111871-189111988
Coord A exon
chr2:189111989-189112004
Coord C2 exon
chr2:189112190-189112274
Length
16 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
GTGTTTTCCCTCCTTCCCAGGGT
3' ss Score
10.76
Exon sequences
Seq C1 exon
AAGACCTAGATCACTATGAGATGAAAGAGGAGGAGCCAGCGGAGGGCAAGAAGTCTGAAGATGATGGCATCGGAAAAGAAAACCTGGCCATCCTAGAGAAAATTAAAAAGAACCAGAG
Seq A exon
GCAAGATTACTTAAAT
Seq C2 exon
GGTGCAGTGTCTGGCTCGGTGCAGGCCACTGACCGGCTGATGAAGGAGCTCAGGGATATATACCGATCACAGAGTTTCAAAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791-8-11,9-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAAAAGAAAACCTGGCCA
R:
TCCCTGAGCTCCTTCATCAGC
Band lengths:
105-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]