HsaALTD1030288-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000160714 | UBE2Q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:HGNC Symbol;Acc:HGNC:15698]
Coordinates
chr1:154552736-154553076:-
Coord C1 exon
chr1:154553048-154553076
Coord A exon
chr1:154553032-154553047
Coord C2 exon
chr1:154552736-154552820
Length
16 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
CTGTCATCCGTCCCTCACAGGGT
3' ss Score
9.94
Exon sequences
Seq C1 exon
ATCCTAGAGAAAATTAAAAAGAACCAGAG
Seq A exon
GCAAGATTACTTAAAT
Seq C2 exon
GGTGCAGTGTCTGGCTCGGTGCAGGCCACTGACCGGCTGATGAAGGAGCTCAGGGATATATACCGATCACAGAGTTTCAAAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160714-9-13,10-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains