DreALTD0022566-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000077987 | zfat
Description
zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
Coordinates
chr16:25440131-25441701:+
Coord C1 exon
chr16:25440131-25440216
Coord A exon
NA
Coord C2 exon
chr16:25441581-25441701
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTG
5' ss Score
0.25
3' ss Seq
ATAATTGTTTGTCCCCCCAGGTA
3' ss Score
10.96
Exon sequences
Seq C1 exon
GTGGAGTGAAATGTCCTGTATGCAATTATGTTTATGGCACTAAATGGGAAATGAATCGACACCTGAAGAGCAAACATGGACTGAAG
Seq A exon
NA
Seq C2 exon
GTAGTGGAGTCAGTGGAGGAGCCGACTATGCAGTACCTGCATATAGCTGAGACTGAAGATCCACAAGGAACTGAGACGGCTGTATCAGCTCTGCAGGACCTGCGATTCAATACACAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077987-18-17,19-17-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.537
Domain overlap (PFAM):
C1:
PF138941=zf-C2H2_4=WD(100=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACACCTGAAGAGCAAACA
R:
CAGCCGTCTCAGTTCCTTGTG
Band lengths:
113-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]