Special

MmuALTD0016018-1/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:67936518-67942124:-
Coord C1 exon
chr15:67942039-67942124
Coord A exon
NA
Coord C2 exon
chr15:67936518-67936641
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
GACATGATGTTTTTATTTAGCCA
3' ss Score
4.56
Exon sequences
Seq C1 exon
GTGGTCTGAAGTGTCCTGTTTGCAGCTTTGTGTATGGAACCAAATGGGAGTTCAACAGACACTTGAAGAACAAACATGGCTTGAAG
Seq A exon
NA
Seq C2 exon
CCAGCAGCAGAGACTCCCGAGGAGCCCTCCACCCAGTATCTCTACATCACTGAAGCTGAAGATGTTCAGGGGACACAAGCAGCTGTGGCTGCACTTCAGGACCTGAGATATACCTCCGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335-19-16,20-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.161 A=NA C2=0.452
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF138941=zf-C2H2_4=WD(100=82.8)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000125732





     
                   









    
Main Skipping Isoform:
ENSMUSP00000125257





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000124974
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr8:135533157-135533158 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr14:8277742-8277743 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr2:148246692-148246693 
Zebrafish
(danRer10)
chr16:25440131-25440216 
LOW PSI
DreALTD0022566-1/2
(zfat)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGAAGTGTCCTGTTTGCAGCT

				
R: 
GAGATACTGGGTGGAGGGCTC

				
Band lengths: 
122-155

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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