DreALTD0022957-2/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000078159 | zgc:175284
Description
zgc:175284 [Source:ZFIN;Acc:ZDB-GENE-080219-49]
Coordinates
chr22:2532778-2533670:+
Coord C1 exon
chr22:2532778-2532832
Coord A exon
chr22:2532833-2532912
Coord C2 exon
chr22:2533561-2533670
Length
80 bp
Sequences
Splice sites
5' ss Seq
TGAGTACGT
5' ss Score
4.8
3' ss Seq
CTCTGTTTGTTCTCCTGAAGCTC
3' ss Score
7.27
Exon sequences
Seq C1 exon
ATTACGCGTTCTGTCAACGTCGAGTCTTCTGGGCTGAGGAAAAAAATCTTCTGAG
Seq A exon
GTGAGGCGTTGTTTACAAAACAACATGACACATTTACACCGATTATAAAGCAACAATCTGCGAACGTCCTTCTGCGTTGA
Seq C2 exon
CTCTGCCGCCATCAGTGAAAGACAAAGACAGAGTTTATTGAAGGACAGTGAGAAGATGAGTGATCCAGAACCCTGCAGAATTAAACAGGAAGACACTGAAGAACTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078159-3-3,4-3,5-3,6-3-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.947
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF032269=Yippee-Mis18=PU(17.1=73.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCAACGTCGAGTCTTCTG
R:
AGTTCTTCAGTGTCTTCCTGTT
Band lengths:
151-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]