DreEX0069078 @ danRer10
Exon Skipping
Gene
ENSDARG00000094309 | si:ch73-92e7.6
Description
si:ch73-92e7.6 [Source:ZFIN;Acc:ZDB-GENE-081031-35]
Coordinates
chr22:2508392-2558685:+
Coord C1 exon
chr22:2508392-2508415
Coord A exon
chr22:2510365-2510367
Coord C2 exon
chr22:2558501-2558685
Length
3 bp
Sequences
Splice sites
3' ss Seq
CTACTTTGTTGACCTCTAAGAAG
3' ss Score
1.09
5' ss Seq
AAGGTTATC
5' ss Score
0.62
Exon sequences
Seq C1 exon
GAGCGTCGAGTCTTCAGAGCTGAG
Seq A exon
AAG
Seq C2 exon
CTCGTCCTCCTTCAGTTCAGCTGTAAATACTGGAATATTCCCATCAGTTTACAAGTGAAGACGAGCATCAGACCATCAGGAAGAAGAGAAATCTGCAAAGACAGAGTTTATTGAAGGACAGTGAGAAGATGAGTGATCCAGAACCCTGCAGAATTAAACAGGAAGAGACTGAAGAACTAATAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094309-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGAGTCTTCAGAGCTGAG
R:
TCCTGATGGTCTGATGCTCGT
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]